Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04347 ATGGCCACCTTGCAGATGTCCCATGTTGATTTGGAACAAGGAAACCATCGCCGTTCGGTTGTTGGAAGTGATGCGAGCGTTGAAGGGAGCTTGTGCTTCTCTGATGCTGATGATGGTTCTTGCTACTCTCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGATTGTGTTTCTGATCCTGAGGCTGGGGGTGTTCATCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGCTCTGTGGAGTTGGAAACTAGAACTGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGTGAGTGATAGCCATGAGTCTGGTGCCCCCATAGAATTGGGTTGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGATCCCTTGTTGCAGTTGTTGAGGTAAAACAATTTCATACTTCTTTTTCTGGTTCTGCAGAGTCACTTGCGGAAGATGGAACAGTTAAAACTTGTATTCAGTGGCCGGCATGGCCTTTTGCATTTGCAAGCCTGCTTGTTTATTTGAAGCATCCTGTTTTGAAGTGGCTATCAATTATTAATGTTGCTTTTCATGTATATGATTGCAAATGTACATTGCTTGGAGCATTATCTCAAGTAAGTGCTGGCATGATTTCTTGGAGGACTTGTGAAATCTGTCATTCTGTTGCTCGGAATGTTTATGGAGGAAACGAGGATTCGACAGAGCATGTTAGCGATGGTAACAATGGTACCACAGCAGCAGCCACAGTCTCCACAACTGCTCCTTTTACAGAACCTCGAAGATTTTGGCATGGTCATCGCTTCCTCAATTTCTTGCTTGCTTGTATGGTTTTTGCATTTGTGATATCATGGCTTTTCCACTTCAATGTGACATCATCGTAG 954 0.4392 MATLQMSHVDLEQGNHRRSVVGSDASVEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFDCVSDPEAGGVHHSGRASSVSECSVELETRTGVPEIKVHLAKVEKDCRICHMGLVSDSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRSLVAVVEVKQFHTSFSGSAESLAEDGTVKTCIQWPAWPFAFASLLVYLKHPVLKWLSIINVAFHVYDCKCTLLGALSQVSAGMISWRTCEICHSVARNVYGGNEDSTEHVSDGNNGTTAAATVSTTAPFTEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVTSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04347 317 Pfam RING-variant domain 105 149 IPR011016 GO:0008270
Vimu6g04347 317 ProSiteProfiles Zinc finger RING-CH-type profile. 97 169 IPR011016 GO:0008270
Vimu6g04347 317 SMART ringv_2 104 152 IPR011016 GO:0008270
Vimu6g04347 317 SUPERFAMILY RING/U-box 102 150 - -
Vimu6g04347 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 175 IPR013083 -
Vimu6g04347 317 PANTHER ZINC FINGER, RING-CH-TYPE 16 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04347 Vimu-Chr6 47445996 47448554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04347 238 317 C3H Transcription Factor Family AT5G05830 56.790 4.46e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04347 - - vum:124847035 309.301