Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04343 AGAACGAAGGTTCTCATTGTTCTTGATGATGTGAATGATTTAGATAACATAGATGATCTTTTAGGAGCTCTTGACAATTTTGGATCAGACAATATCATAATTGTAACAATCAGAGATGAGCAAGTGCTTAAAGCTAACAGAGCTTATGAGATATACCATCTTAGAGAATTCACTTCGGATGAAGCTCTTGAACTTTTCAATCTGAATGCCTTTAACCAAAGTGTTCATCAATGGCAGTACGATAAACTCTCAAAAATGTTTTTTTATTATGCCAAAGGCCTTCCACTAATTCTGAAAGCTTTGCTCATCGACTATACGGAAAGAATGAGGAAGTATGGGAAAGTGAGCTAG 351 0.3561 RTKVLIVLDDVNDLDNIDDLLGALDNFGSDNIIIVTIRDEQVLKANRAYEIYHLREFTSDEALELFNLNAFNQSVHQWQYDKLSKMFFYYAKGLPLILKALLIDYTERMRKYGKVS 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04343 116 Pfam NB-ARC domain 3 101 IPR002182 GO:0043531
Vimu6g04343 116 Gene3D - 1 51 IPR027417 -
Vimu6g04343 116 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 101 IPR044974 GO:0006952
Vimu6g04343 116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 101 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04343 Vimu-Chr6 47318991 47319341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04343 3 98 WRKY Transcription Factor Family AT5G45050 35.417 7.23e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04343 - - var:108330137 140.969