Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04332 TCTTCTGATTCGGAAGCAAATGCTTTGTTGAAGTGGAAAGGCAGCCTTGACAGCCACAGTCAAGCGTCTCTCTCTTCATGGAATGGCACTAATCCTTGCAACTGGCTGGGAATAGAATGTGATGATTCCCATTCTGTTTCTCACGTAAATCTTACAGGTGTTGGATTAAAAGGTACACTTCAAGCTTTTAACTTCTCATTACTTCCAAACATTCTCATTCTGAATATGAGTTTCAACTACTTGTCTGGAAGTATTCCTCCAGAGATTGAACACTTGTCCAATCTCAACACGCTTGATTTGTCTACCAATAAACTCTCCGGTAACATTTCCAAAACCATCTGTAATCTATCCAAACTAAAGTATCTGAATCTTAGTGTCAATGGTCTCTCTGGTTCTATTCCTAATGAAGTGGATAATCTCCAGTCTCTTCTCACATTCGATATATTTACCAACAACCTCTCTGGGCCAATCCCTCCTACCTTAGGAAACTTGCCCCTTTTAGAATCCATTCACCTTTTTGAAAATAAACTTTCTGGATCCATTCCTACCAGTATTGGGAATTTGTCCAGGCTCACCATGTTATCTTTATCTTCAAATCAACTCACCGGATCCATCCCTCCCCATATCGGAAATTTAACAAACGCCAAGGTCATATGTGTTATTGAAAATGAACTTACTGGCGAGATTCCGATAGAAATGGAGAAGCTTACTGGTCTCGAATGTTTGTCAATTGCTGATAATAATTTTATAGGCCAAATACCTCAGAACGTTTGCCTCGGCGGAAACATGAAATACTTCACAGCTGGTAATAACAATTTCACTGGCCCAATTCCAGAGACTTTGAAGAAATGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAACCATCTAACTGGGGATATAACAAACTTTTTTGATGTCCTTCCAGATTTGAACTACATCGATCTCAGTGAAAATAATTTTCACGGTAATCTTTCACCTACTTGGGGAAAATTTCGCAGCCTCACAAGCTTCATGATTTTCAAAAACAATTTGTCAGGTGTTATTCCACCAGAACTAGGTGGGTTAACCAAATTACAGCTGCTTGATCTATCCTCAAACCATCTTACAGGAAACATTCCAGAAGATTTATGCAACTTGACCCTCTTGTTTGATCTTTCAATCAACAACAATAATCTTTCTGGAAATGTTCCCTCGAAAATAGAATCACTGAAGGTACTTAAATTTTTGGAGCTCGGGTCAAATGATTTCACAGGCTTAATCCAGAAACAGCTTGGAAATTTGCACAATTTATTGTCTTTGAATCTGAGCCAGAATAAATTTGAGGGAAATATTCCTTCTGAGCTTGGCAGTTTGAATTTTCTCACAAGTCTTGATCTCAGTGGAAATTTGTTGAGTGGAAGATTACCTCCAACGCTTGGTGGAATAAAAGGCTTAGAAACATTGAATCTATCGCACAACAGTCTTTCAGGTGGTCTCTCTAGCTTAGATGATATGATAAGCTTGACATCTTTTGATATATCATACAACCAGTTTGAGGGTCCACTTCCTGAAAATCCAGTCTTCCACAATGTCACCATTGAAGTTCTGAGAAATAATAAAGGCCTGTGTGGCAATGTCGCAGGCTTGGAGCCTTGCCCGACAGTAAGTGGGAAATCTCATAATAATACAACAAGGAAAGTGCTAATAGCAGTTTTGGTGTCTACTGTAATGCTTGCACTATTTCTTTTTGGTGTCTACTGTAATTTATGCCGAACTTCAACAAAAGAACAATTGCAGGCTCTAAGTTCACGATCTCCTAGCATGTTTCCAGTATGGAGTTTCGGAGGCAAAATTCTGTTTGAGAATATTATTGAAGCCACCGAATATTTTGATGACAAATATCTCATTGGAGTTGGAGGTCAAGGTTGTGTTTACAAAGCAGTATTACCAACAGGTGAAGTTGTTGCTGTGAAAAAACTCCATTCAGTTTCAAATGGAGAAATCCTCAATCAGAAAGCTTTCACAAGTGAGATCCAGGCTTTGACAGAAATCCGACATCGTAACATTGTAAAGTTTCATGGTTTTTGTTCGCATTCACAATACTCATTTTTGGTGTGCGGATTCCTAGAGAGGGGCGATGTGAAGAAGATTTTGAAAGATGATGAACAAGCAACTGCATTTGATTGGAAGAAAAGGGTGGATGCTGTTAAAGACGTGGCAAATGCTTTATGCTACATGCACCATGATTGCTTACCTCCAATTGTTCATCGTGATATATCAAGCAAAAATGTTCTTTTGGATTCAGAATATGTAGCTCATGTCTCAGACTTCGGAACAGCTAAGCTTCTTGATCATAGTTCAGCCAATTGGACATCATTTGCAGGAACCTTTGGATATGCTGCTCCTGAACTTGCATACACAATGCAAGTAAACGAGAAATGTGACGTGTATAGTTTTGGGGTCTTGGCATTGGAAATATTATTTGGAAGGCACCCTGGTGATGTTACATCTTTATTGCAATCTTCTTTATCAATTGGTATGATCTCAACACTTGATCATATGGCATTGATGGATAACTTGGATGAACGTCTACCTGATCCAACAACTTCTACTTTGAAAGAGTTGGTATCAATTCTCAAGATAGCAATTTCTTGCCTGACTGAAAGTCCACGATCTCGCCCAACCATGAAGCTCGTAACCAACGAGCTTGCGATGTGGAGCTCACATTCAATGTCACACACAGAGCTGAAAGACTGA 2739 0.3925 SSDSEANALLKWKGSLDSHSQASLSSWNGTNPCNWLGIECDDSHSVSHVNLTGVGLKGTLQAFNFSLLPNILILNMSFNYLSGSIPPEIEHLSNLNTLDLSTNKLSGNISKTICNLSKLKYLNLSVNGLSGSIPNEVDNLQSLLTFDIFTNNLSGPIPPTLGNLPLLESIHLFENKLSGSIPTSIGNLSRLTMLSLSSNQLTGSIPPHIGNLTNAKVICVIENELTGEIPIEMEKLTGLECLSIADNNFIGQIPQNVCLGGNMKYFTAGNNNFTGPIPETLKKCYSLKRLRLQQNHLTGDITNFFDVLPDLNYIDLSENNFHGNLSPTWGKFRSLTSFMIFKNNLSGVIPPELGGLTKLQLLDLSSNHLTGNIPEDLCNLTLLFDLSINNNNLSGNVPSKIESLKVLKFLELGSNDFTGLIQKQLGNLHNLLSLNLSQNKFEGNIPSELGSLNFLTSLDLSGNLLSGRLPPTLGGIKGLETLNLSHNSLSGGLSSLDDMISLTSFDISYNQFEGPLPENPVFHNVTIEVLRNNKGLCGNVAGLEPCPTVSGKSHNNTTRKVLIAVLVSTVMLALFLFGVYCNLCRTSTKEQLQALSSRSPSMFPVWSFGGKILFENIIEATEYFDDKYLIGVGGQGCVYKAVLPTGEVVAVKKLHSVSNGEILNQKAFTSEIQALTEIRHRNIVKFHGFCSHSQYSFLVCGFLERGDVKKILKDDEQATAFDWKKRVDAVKDVANALCYMHHDCLPPIVHRDISSKNVLLDSEYVAHVSDFGTAKLLDHSSANWTSFAGTFGYAAPELAYTMQVNEKCDVYSFGVLALEILFGRHPGDVTSLLQSSLSIGMISTLDHMALMDNLDERLPDPTTSTLKELVSILKIAISCLTESPRSRPTMKLVTNELAMWSSHSMSHTELKD 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04332 912 SUPERFAMILY L domain-like 259 525 - -
Vimu6g04332 912 Gene3D Phosphorylase Kinase; domain 1 586 702 - -
Vimu6g04332 912 Pfam Leucine rich repeat N-terminal domain 3 41 IPR013210 -
Vimu6g04332 912 Gene3D Ribonuclease Inhibitor 262 554 IPR032675 -
Vimu6g04332 912 Gene3D Ribonuclease Inhibitor 2 150 IPR032675 -
Vimu6g04332 912 PRINTS Leucine-rich repeat signature 356 369 - -
Vimu6g04332 912 PRINTS Leucine-rich repeat signature 95 108 - -
Vimu6g04332 912 ProSiteProfiles Leucine-rich repeat profile. 358 381 IPR001611 GO:0005515
Vimu6g04332 912 SUPERFAMILY Protein kinase-like (PK-like) 601 898 IPR011009 -
Vimu6g04332 912 Gene3D Ribonuclease Inhibitor 151 261 IPR032675 -
Vimu6g04332 912 SUPERFAMILY L domain-like 5 300 - -
Vimu6g04332 912 SMART LRR_typ_2 428 452 IPR003591 -
Vimu6g04332 912 SMART LRR_typ_2 92 116 IPR003591 -
Vimu6g04332 912 SMART LRR_typ_2 188 212 IPR003591 -
Vimu6g04332 912 SMART LRR_typ_2 236 260 IPR003591 -
Vimu6g04332 912 SMART LRR_typ_2 356 380 IPR003591 -
Vimu6g04332 912 SMART LRR_typ_2 68 91 IPR003591 -
Vimu6g04332 912 FunFam Uncharacterized protein 258 555 - -
Vimu6g04332 912 SMART LRR_sd22_2 188 214 - -
Vimu6g04332 912 SMART LRR_sd22_2 92 118 - -
Vimu6g04332 912 SMART LRR_sd22_2 452 481 - -
Vimu6g04332 912 SMART LRR_sd22_2 356 382 - -
Vimu6g04332 912 Pfam Leucine Rich Repeat 358 380 IPR001611 GO:0005515
Vimu6g04332 912 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515
Vimu6g04332 912 Gene3D Transferase(Phosphotransferase) domain 1 703 911 - -
Vimu6g04332 912 FunFam MDIS1-interacting receptor like kinase 2 703 903 - -
Vimu6g04332 912 PANTHER LEUCINE RICH REPEAT KINASE 2 160 903 - -
Vimu6g04332 912 FunFam Leucine-rich repeat receptor protein kinase MSP1 587 702 - -
Vimu6g04332 912 ProSiteProfiles Protein kinase domain profile. 624 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04332 912 FunFam Nuclear pore complex protein NUP107 2 157 - -
Vimu6g04332 912 Pfam Protein kinase domain 626 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04332 912 ProSitePatterns Tyrosine protein kinases specific active-site signature. 748 760 IPR008266 GO:0004672|GO:0006468
Vimu6g04332 912 FunFam MDIS1-interacting receptor like kinase 2 isoform A 158 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04332 Vimu-Chr6 47093524 47096392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04332 65 796 Receptor kinase-like Gene Family AT4G08850 44.011 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g04332 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04332 - - gmx:100809509 1367.44