Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g04332 | TCTTCTGATTCGGAAGCAAATGCTTTGTTGAAGTGGAAAGGCAGCCTTGACAGCCACAGTCAAGCGTCTCTCTCTTCATGGAATGGCACTAATCCTTGCAACTGGCTGGGAATAGAATGTGATGATTCCCATTCTGTTTCTCACGTAAATCTTACAGGTGTTGGATTAAAAGGTACACTTCAAGCTTTTAACTTCTCATTACTTCCAAACATTCTCATTCTGAATATGAGTTTCAACTACTTGTCTGGAAGTATTCCTCCAGAGATTGAACACTTGTCCAATCTCAACACGCTTGATTTGTCTACCAATAAACTCTCCGGTAACATTTCCAAAACCATCTGTAATCTATCCAAACTAAAGTATCTGAATCTTAGTGTCAATGGTCTCTCTGGTTCTATTCCTAATGAAGTGGATAATCTCCAGTCTCTTCTCACATTCGATATATTTACCAACAACCTCTCTGGGCCAATCCCTCCTACCTTAGGAAACTTGCCCCTTTTAGAATCCATTCACCTTTTTGAAAATAAACTTTCTGGATCCATTCCTACCAGTATTGGGAATTTGTCCAGGCTCACCATGTTATCTTTATCTTCAAATCAACTCACCGGATCCATCCCTCCCCATATCGGAAATTTAACAAACGCCAAGGTCATATGTGTTATTGAAAATGAACTTACTGGCGAGATTCCGATAGAAATGGAGAAGCTTACTGGTCTCGAATGTTTGTCAATTGCTGATAATAATTTTATAGGCCAAATACCTCAGAACGTTTGCCTCGGCGGAAACATGAAATACTTCACAGCTGGTAATAACAATTTCACTGGCCCAATTCCAGAGACTTTGAAGAAATGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAACCATCTAACTGGGGATATAACAAACTTTTTTGATGTCCTTCCAGATTTGAACTACATCGATCTCAGTGAAAATAATTTTCACGGTAATCTTTCACCTACTTGGGGAAAATTTCGCAGCCTCACAAGCTTCATGATTTTCAAAAACAATTTGTCAGGTGTTATTCCACCAGAACTAGGTGGGTTAACCAAATTACAGCTGCTTGATCTATCCTCAAACCATCTTACAGGAAACATTCCAGAAGATTTATGCAACTTGACCCTCTTGTTTGATCTTTCAATCAACAACAATAATCTTTCTGGAAATGTTCCCTCGAAAATAGAATCACTGAAGGTACTTAAATTTTTGGAGCTCGGGTCAAATGATTTCACAGGCTTAATCCAGAAACAGCTTGGAAATTTGCACAATTTATTGTCTTTGAATCTGAGCCAGAATAAATTTGAGGGAAATATTCCTTCTGAGCTTGGCAGTTTGAATTTTCTCACAAGTCTTGATCTCAGTGGAAATTTGTTGAGTGGAAGATTACCTCCAACGCTTGGTGGAATAAAAGGCTTAGAAACATTGAATCTATCGCACAACAGTCTTTCAGGTGGTCTCTCTAGCTTAGATGATATGATAAGCTTGACATCTTTTGATATATCATACAACCAGTTTGAGGGTCCACTTCCTGAAAATCCAGTCTTCCACAATGTCACCATTGAAGTTCTGAGAAATAATAAAGGCCTGTGTGGCAATGTCGCAGGCTTGGAGCCTTGCCCGACAGTAAGTGGGAAATCTCATAATAATACAACAAGGAAAGTGCTAATAGCAGTTTTGGTGTCTACTGTAATGCTTGCACTATTTCTTTTTGGTGTCTACTGTAATTTATGCCGAACTTCAACAAAAGAACAATTGCAGGCTCTAAGTTCACGATCTCCTAGCATGTTTCCAGTATGGAGTTTCGGAGGCAAAATTCTGTTTGAGAATATTATTGAAGCCACCGAATATTTTGATGACAAATATCTCATTGGAGTTGGAGGTCAAGGTTGTGTTTACAAAGCAGTATTACCAACAGGTGAAGTTGTTGCTGTGAAAAAACTCCATTCAGTTTCAAATGGAGAAATCCTCAATCAGAAAGCTTTCACAAGTGAGATCCAGGCTTTGACAGAAATCCGACATCGTAACATTGTAAAGTTTCATGGTTTTTGTTCGCATTCACAATACTCATTTTTGGTGTGCGGATTCCTAGAGAGGGGCGATGTGAAGAAGATTTTGAAAGATGATGAACAAGCAACTGCATTTGATTGGAAGAAAAGGGTGGATGCTGTTAAAGACGTGGCAAATGCTTTATGCTACATGCACCATGATTGCTTACCTCCAATTGTTCATCGTGATATATCAAGCAAAAATGTTCTTTTGGATTCAGAATATGTAGCTCATGTCTCAGACTTCGGAACAGCTAAGCTTCTTGATCATAGTTCAGCCAATTGGACATCATTTGCAGGAACCTTTGGATATGCTGCTCCTGAACTTGCATACACAATGCAAGTAAACGAGAAATGTGACGTGTATAGTTTTGGGGTCTTGGCATTGGAAATATTATTTGGAAGGCACCCTGGTGATGTTACATCTTTATTGCAATCTTCTTTATCAATTGGTATGATCTCAACACTTGATCATATGGCATTGATGGATAACTTGGATGAACGTCTACCTGATCCAACAACTTCTACTTTGAAAGAGTTGGTATCAATTCTCAAGATAGCAATTTCTTGCCTGACTGAAAGTCCACGATCTCGCCCAACCATGAAGCTCGTAACCAACGAGCTTGCGATGTGGAGCTCACATTCAATGTCACACACAGAGCTGAAAGACTGA | 2739 | 0.3925 | SSDSEANALLKWKGSLDSHSQASLSSWNGTNPCNWLGIECDDSHSVSHVNLTGVGLKGTLQAFNFSLLPNILILNMSFNYLSGSIPPEIEHLSNLNTLDLSTNKLSGNISKTICNLSKLKYLNLSVNGLSGSIPNEVDNLQSLLTFDIFTNNLSGPIPPTLGNLPLLESIHLFENKLSGSIPTSIGNLSRLTMLSLSSNQLTGSIPPHIGNLTNAKVICVIENELTGEIPIEMEKLTGLECLSIADNNFIGQIPQNVCLGGNMKYFTAGNNNFTGPIPETLKKCYSLKRLRLQQNHLTGDITNFFDVLPDLNYIDLSENNFHGNLSPTWGKFRSLTSFMIFKNNLSGVIPPELGGLTKLQLLDLSSNHLTGNIPEDLCNLTLLFDLSINNNNLSGNVPSKIESLKVLKFLELGSNDFTGLIQKQLGNLHNLLSLNLSQNKFEGNIPSELGSLNFLTSLDLSGNLLSGRLPPTLGGIKGLETLNLSHNSLSGGLSSLDDMISLTSFDISYNQFEGPLPENPVFHNVTIEVLRNNKGLCGNVAGLEPCPTVSGKSHNNTTRKVLIAVLVSTVMLALFLFGVYCNLCRTSTKEQLQALSSRSPSMFPVWSFGGKILFENIIEATEYFDDKYLIGVGGQGCVYKAVLPTGEVVAVKKLHSVSNGEILNQKAFTSEIQALTEIRHRNIVKFHGFCSHSQYSFLVCGFLERGDVKKILKDDEQATAFDWKKRVDAVKDVANALCYMHHDCLPPIVHRDISSKNVLLDSEYVAHVSDFGTAKLLDHSSANWTSFAGTFGYAAPELAYTMQVNEKCDVYSFGVLALEILFGRHPGDVTSLLQSSLSIGMISTLDHMALMDNLDERLPDPTTSTLKELVSILKIAISCLTESPRSRPTMKLVTNELAMWSSHSMSHTELKD | 912 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g04332 | 912 | SUPERFAMILY | L domain-like | 259 | 525 | - | - | |
Vimu6g04332 | 912 | Gene3D | Phosphorylase Kinase; domain 1 | 586 | 702 | - | - | |
Vimu6g04332 | 912 | Pfam | Leucine rich repeat N-terminal domain | 3 | 41 | IPR013210 | - | |
Vimu6g04332 | 912 | Gene3D | Ribonuclease Inhibitor | 262 | 554 | IPR032675 | - | |
Vimu6g04332 | 912 | Gene3D | Ribonuclease Inhibitor | 2 | 150 | IPR032675 | - | |
Vimu6g04332 | 912 | PRINTS | Leucine-rich repeat signature | 356 | 369 | - | - | |
Vimu6g04332 | 912 | PRINTS | Leucine-rich repeat signature | 95 | 108 | - | - | |
Vimu6g04332 | 912 | ProSiteProfiles | Leucine-rich repeat profile. | 358 | 381 | IPR001611 | GO:0005515 | |
Vimu6g04332 | 912 | SUPERFAMILY | Protein kinase-like (PK-like) | 601 | 898 | IPR011009 | - | |
Vimu6g04332 | 912 | Gene3D | Ribonuclease Inhibitor | 151 | 261 | IPR032675 | - | |
Vimu6g04332 | 912 | SUPERFAMILY | L domain-like | 5 | 300 | - | - | |
Vimu6g04332 | 912 | SMART | LRR_typ_2 | 428 | 452 | IPR003591 | - | |
Vimu6g04332 | 912 | SMART | LRR_typ_2 | 92 | 116 | IPR003591 | - | |
Vimu6g04332 | 912 | SMART | LRR_typ_2 | 188 | 212 | IPR003591 | - | |
Vimu6g04332 | 912 | SMART | LRR_typ_2 | 236 | 260 | IPR003591 | - | |
Vimu6g04332 | 912 | SMART | LRR_typ_2 | 356 | 380 | IPR003591 | - | |
Vimu6g04332 | 912 | SMART | LRR_typ_2 | 68 | 91 | IPR003591 | - | |
Vimu6g04332 | 912 | FunFam | Uncharacterized protein | 258 | 555 | - | - | |
Vimu6g04332 | 912 | SMART | LRR_sd22_2 | 188 | 214 | - | - | |
Vimu6g04332 | 912 | SMART | LRR_sd22_2 | 92 | 118 | - | - | |
Vimu6g04332 | 912 | SMART | LRR_sd22_2 | 452 | 481 | - | - | |
Vimu6g04332 | 912 | SMART | LRR_sd22_2 | 356 | 382 | - | - | |
Vimu6g04332 | 912 | Pfam | Leucine Rich Repeat | 358 | 380 | IPR001611 | GO:0005515 | |
Vimu6g04332 | 912 | Pfam | Leucine Rich Repeat | 118 | 140 | IPR001611 | GO:0005515 | |
Vimu6g04332 | 912 | Gene3D | Transferase(Phosphotransferase) domain 1 | 703 | 911 | - | - | |
Vimu6g04332 | 912 | FunFam | MDIS1-interacting receptor like kinase 2 | 703 | 903 | - | - | |
Vimu6g04332 | 912 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 160 | 903 | - | - | |
Vimu6g04332 | 912 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 587 | 702 | - | - | |
Vimu6g04332 | 912 | ProSiteProfiles | Protein kinase domain profile. | 624 | 910 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu6g04332 | 912 | FunFam | Nuclear pore complex protein NUP107 | 2 | 157 | - | - | |
Vimu6g04332 | 912 | Pfam | Protein kinase domain | 626 | 893 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu6g04332 | 912 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 748 | 760 | IPR008266 | GO:0004672|GO:0006468 | |
Vimu6g04332 | 912 | FunFam | MDIS1-interacting receptor like kinase 2 isoform A | 158 | 257 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g04332 | Vimu-Chr6 | 47093524 | 47096392 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g04332 | 65 | 796 | Receptor kinase-like Gene Family | AT4G08850 | 44.011 | 0.0 | 608 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vimu6g04332 | Pkinase | 1.5e-43 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g04332 | - | - | gmx:100809509 | 1367.44 |