Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04325 ATGGGTGGTGTTGCGTGGACAGAAGAAGAAGATCACTTGCTCAAGAAATGCATACAACAATATGGAGAAGGAAAGTGGCATCGTGTTCCTTTGCTAGCTGGTTTAAACAGGTGTCGAAAGAGTTGTAGGCTAAGATGGCTGAATTATCTCCGTCCGAACATCAAGAGGGGAAATTTTGCGGAGGAAGAAGTGGAGATGATAATCAAACTCCACAAATTATTAGGCAACAGGTGGTCACTGATAGCAGGAAGGCTACCAGGAAGGACTGCTAATGATGTGAAGAACTATTGGAACTGTCATCTGAGCAAAAGACTAAATGCTCAAGAAGCAGAAGATAAAGGTGGAAGCAGAGATGTTGAAGTGATAAGGCCTCAGGCAAGGAATATGGGTTCAAGCTCAGTGAAAAGAAGGAGTGAGGGAGTCCCTCAAAGAGAGAAAGCAGTTGAACAAGAGAGCAGCATGTCCTCACTGACATTTGATGCTGATGGACAGAACCAAGTGGTTGAATCACAGGAAGAGAACATATATGCATGCTTGGACCAACAAGGAATTGTTAATGAATATTCAATGGACTTTCAATTAGAAGGATTTGAAGATGTGATGAAAGGAGAAGGGAGTAGCAGCCAATGGGATTGGGGTGATTTGCTCCTTGACATGGATTTGTATAAGTGA 672 0.4286 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIIKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKRLNAQEAEDKGGSRDVEVIRPQARNMGSSSVKRRSEGVPQREKAVEQESSMSSLTFDADGQNQVVESQEENIYACLDQQGIVNEYSMDFQLEGFEDVMKGEGSSSQWDWGDLLLDMDLYK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04325 223 SMART sant 2 52 IPR001005 -
Vimu6g04325 223 SMART sant 55 103 IPR001005 -
Vimu6g04325 223 FunFam Myb transcription factor 3 55 - -
Vimu6g04325 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Vimu6g04325 223 Gene3D - 57 121 - -
Vimu6g04325 223 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vimu6g04325 223 MobiDBLite consensus disorder prediction 108 160 - -
Vimu6g04325 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Vimu6g04325 223 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Vimu6g04325 223 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Vimu6g04325 223 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 164 - -
Vimu6g04325 223 CDD SANT 58 101 IPR001005 -
Vimu6g04325 223 Gene3D - 4 55 - -
Vimu6g04325 223 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Vimu6g04325 223 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Vimu6g04325 223 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04325 Vimu-Chr6 46903258 46905179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04325 5 130 MYB Transcription Factor Family AT1G66370 59.124 1.16e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g04325 Myb_DNA-binding 9.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04325 K09422 - gmx:100809746 378.637