Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04318 ATGGCTGGAAGTGATGAAGAGTTGACCCTTCTGGGAGTTGTGGGAAGCCCATTTCTGCACAGGGTTCAGATCGCTCTCAAATTGAAGGGAATAGAATACAAATACGTTGAAGATGATTTGAACAACAAGAGTGATCTTCTCCTCAAGTATAACCCAGTTTACAAAATGATTCCTGTGCTCATTCACAACGATAACCCAATATCAGAGTCCCTTGTCATTGTTGAGTACATCGATGACACATGGAAACACAACCCCATCTTGCCTTCGGATCCTTACCAGAGAGCCTTGGCTCGTTTCTGGGCTAAGTTCATCGATGACAAGTGTGTGGCTCCAGCATGGAAATCTGCGTTCATAGTTGATGAGAAAGAGAAAGAGAAGGCTGTAGAAGAGTTATTTGAGGCTCTTGGGTTTCTTGAGAATGAGCTGAAGGGGAAGTTTTTTGGTGGGGATGAGATTGGGTTTGTGGATATTGCTGGAGTTTTCATACCTATTGTTCAAGAGATTGCAGGGTTGCAATTGTTCTCAAGTGAGAAATTTCCAAGGTTGTATAAATGGAGCCAAGACTTTCACAACCACCCACTTGTGAACGAGGTTCTGCCTCCAAAACACCAACTTTTTGCCTATTTCAAGGCTCGGGCTCAAAGCCTTGCTGCTAAAAGGAAAACTTAG 669 0.435 MAGSDEELTLLGVVGSPFLHRVQIALKLKGIEYKYVEDDLNNKSDLLLKYNPVYKMIPVLIHNDNPISESLVIVEYIDDTWKHNPILPSDPYQRALARFWAKFIDDKCVAPAWKSAFIVDEKEKEKAVEELFEALGFLENELKGKFFGGDEIGFVDIAGVFIPIVQEIAGLQLFSSEKFPRLYKWSQDFHNHPLVNEVLPPKHQLFAYFKARAQSLAAKRKT 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04318 222 SUPERFAMILY GST C-terminal domain-like 79 214 IPR036282 -
Vimu6g04318 222 Coils Coil 121 141 - -
Vimu6g04318 222 CDD GST_C_Tau 91 212 IPR045074 GO:0004364|GO:0006749
Vimu6g04318 222 Gene3D - 90 220 - -
Vimu6g04318 222 Pfam Glutathione S-transferase, C-terminal domain 119 193 IPR004046 -
Vimu6g04318 222 Pfam Glutathione S-transferase, N-terminal domain 7 78 IPR004045 -
Vimu6g04318 222 CDD GST_N_Tau 8 81 - -
Vimu6g04318 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 209 IPR010987 -
Vimu6g04318 222 SFLD Main.3: Omega- and Tau-like 5 220 IPR045073 -
Vimu6g04318 222 SFLD Main (cytGST) 5 220 - -
Vimu6g04318 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 11 204 IPR045073 -
Vimu6g04318 222 FunFam Tau class glutathione S-transferase 1 89 - -
Vimu6g04318 222 SUPERFAMILY Thioredoxin-like 8 108 IPR036249 -
Vimu6g04318 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Vimu6g04318 222 FunFam Tau class glutathione S-transferase 87 219 - -
Vimu6g04318 222 Gene3D Glutaredoxin 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04318 Vimu-Chr6 46568612 46569494 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04318 4 218 Glutathione S-transferase Gene Family AT3G09270 52.703 2.63e-73 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04318 K00799 - gmx:548029 390.578