Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04300 ATGCGTGTAGAGACCAAACCCCATACCACACCCCAATTTCTCAAATCACTTCACTTCACTCACCATCACTTCCACTATTCTTCTCTGCAACTTCCGTCACCTCTTCTGCTCCACTCTCTTTCCCTCTTCTCCTTCTTCATCTGCAACATCATCACCAACTACACCAACCCCTCTCTTTTTAACTTTCTTTTCTTCCCTATGGCTGAGGGTTTTGAGCATTACCATGTCCCACAACAAAGTAGGAGGGACAAGCTAAGAGTTTTCGCTCAGAACCACCCTTCTTTCGTTGAATCTTCCTCTATCCTTCACCCCACTTCTCCAAATTTAACCTCTCTCTACGATCCTTCTCTTATTCCCTCTGATTTCTTAGCTTGTGCCACCCAACAAGCTGCCGCTGCCAAGGGAGAAGGTTCCAATTTGATGATGGGGTTTGTCGAAGGAGGGGTTGTCAATGGTGATGCAATTCATGTTATCAACAGTCATAGCAACCACCACAACAACAACCCTTTTCTCTATCAGCTTCAGAACCTTAGGGAATTTGGTGATGGCTACAATGATGCCAGTGAAATGATGGTGTTCAAGCCCGAGCCTTTGTCTTTGTCTTTGTCTTCCCAGAGTAACAACACTCATCACCCTTTGGAACTGAATCTTCAGCGATTTGGGGCTGTTATTCCTGGTTTGGTTGGAAGGAACAGTGAGGTTTCGAGGAATTCGGTTCCACTTGGACCCTTCACGGGGTATGCTTCGATATTGAAGGAATCGCGGTTCTTGAAACCTGCACAGCAATTATTGGAAGAGTTATGTGATGGTGGGGTTCGTGAAATTTACGCTACCGAGAAGTCACTTGCTCCTGATGCGTCGTTGATGGAACCTCCTCATGAGGGTTTGAGTGCCAGTGGAGTTGTTGGTGGGGATGATCCACTTGGGGACTATGAAAATGAGAGTAGGAAGAAGAAGTGTAGATTATTAACCATGCTTGACGAGATGCTTGTATTTGGTGGTATAGATGACCTCGGTGAACTTGGTTATCTTTTTGGAAAAGTTATTGGCAGGGAATATATGCACGAAGATTGGGAGTGTAAAGTTTACAGGAGGTACAGGCAGTATTATCAACAGATGCATGCAGTGATAACATCATTCGAGTATGTTTCTGGTCTTGGTAATGCAGCCCCATATGCAAGTTTGGCTATAAATGCCATGTCGAAACATTTTAAATGCTTGAAGAATGCTATAACTGACCAGCTTCAGTTCATCAACAAGGCTCCTTTTCAGATTAGTAACAGAAAGGATGAATCTCCAAGGCTGCACAACAGTGATAGGGGCACTTGCAGCCAAAGGCCAGGGTTTCTTGAGCACCAGCAGCCTGTTTGGCGACCTCAAAGAGGACTTCCTGAGCGTGCTGTCAGTGTTCTCAGGGCCTGGTTGTTTGAACACTTTCTTCACCCTTACCCTACTGATACCGACAAGCTTATGTTGGCTAAACAAACTGGTCTATCTCGCAACCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATACACATGCTAGAATCACAGCAAGCTCAGAAAAGGCCACAGAGGGAAGAACAAAGTAGGAGAAACTTAAGTGGTGGTGATCATTTACCTTCAGACAACTCTCTTGTTACTGAGAATATTCCATCTACCTCCATGGAGAAGTTTCAGGATGCCCATTATAAACAACACAGAAATGAAATTGCTAATATGCAAGTGAGGGGTCAGGAACAGCTGAATCAAACCAACACAAGCAATCAGCAAATGGGTGTTGGAGTGAGCATTAATAATGGTGTGTCTCTCACACTTGGTCTTCATCAAAATCATGGTATTGGTTTGTCTGAGCCCTTTGGCATGAGTGCAGCTCAACGTTTTGGTGTTGCCCTTCAGCCTGAGGGCTATGTTATAAGTGGTTTTGAATCACAAAATCGACATTTCGGAAGAGATGTCATTGGAGGAGGGCAACTGTTGCATGATTTTGTAGGCTGA 2028 0.4438 MRVETKPHTTPQFLKSLHFTHHHFHYSSLQLPSPLLLHSLSLFSFFICNIITNYTNPSLFNFLFFPMAEGFEHYHVPQQSRRDKLRVFAQNHPSFVESSSILHPTSPNLTSLYDPSLIPSDFLACATQQAAAAKGEGSNLMMGFVEGGVVNGDAIHVINSHSNHHNNNPFLYQLQNLREFGDGYNDASEMMVFKPEPLSLSLSSQSNNTHHPLELNLQRFGAVIPGLVGRNSEVSRNSVPLGPFTGYASILKESRFLKPAQQLLEELCDGGVREIYATEKSLAPDASLMEPPHEGLSASGVVGGDDPLGDYENESRKKKCRLLTMLDEMLVFGGIDDLGELGYLFGKVIGREYMHEDWECKVYRRYRQYYQQMHAVITSFEYVSGLGNAAPYASLAINAMSKHFKCLKNAITDQLQFINKAPFQISNRKDESPRLHNSDRGTCSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQAQKRPQREEQSRRNLSGGDHLPSDNSLVTENIPSTSMEKFQDAHYKQHRNEIANMQVRGQEQLNQTNTSNQQMGVGVSINNGVSLTLGLHQNHGIGLSEPFGMSAAQRFGVALQPEGYVISGFESQNRHFGRDVIGGGQLLHDFVG 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04300 675 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 163 538 - -
Vimu6g04300 675 MobiDBLite consensus disorder prediction 526 559 - -
Vimu6g04300 675 SUPERFAMILY Homeodomain-like 459 524 IPR009057 -
Vimu6g04300 675 SMART HOX_1 457 521 IPR001356 GO:0003677
Vimu6g04300 675 MobiDBLite consensus disorder prediction 526 544 - -
Vimu6g04300 675 ProSiteProfiles 'Homeobox' domain profile. 454 517 IPR001356 GO:0003677
Vimu6g04300 675 MobiDBLite consensus disorder prediction 428 451 - -
Vimu6g04300 675 Pfam Homeobox KN domain 474 513 IPR008422 GO:0003677|GO:0006355
Vimu6g04300 675 CDD homeodomain 457 518 IPR001356 GO:0003677
Vimu6g04300 675 FunFam BEL1-like homeodomain protein 9 460 522 - -
Vimu6g04300 675 Pfam Associated with HOX 250 412 IPR006563 -
Vimu6g04300 675 Gene3D - 460 522 - -
Vimu6g04300 675 MobiDBLite consensus disorder prediction 545 559 - -
Vimu6g04300 675 MobiDBLite consensus disorder prediction 284 306 - -
Vimu6g04300 675 SMART prehox3 245 413 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04300 Vimu-Chr6 46258701 46263855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04300 67 675 Homeobox Transcription Factor Family AT5G02030 42.900 1.69e-119 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu6g04300 POX 5.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04300 - - gmx:100790713 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04300 6 46258701 46263855 Vimu6g04300 6 46258701 46263855 ECH