Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04283 ATGGCATTGTTGCTATCACTGGCTCAGGCCACGCGAAAGTGCGGGAATTGCGGTCCGAACCCGGTTCCTTACCCATTAAGCACCGGACCCGACTGTGGCGACCCGTTGTACAAGATCCGGTGCACCGCGGGTATTCTCTGGTTCGATGCACTCGCCGGATCTTCTTACGCGATCAGGGCTATTGACCCGTTCACCCGTCGGATCATAACTCGACCCGCCACGCTGGCCCCAAAATCGTGCGTGTCCACGGACTTCCGCAGCGAAGGCATGCACCTGAACGAGACCCTTCCTTTCAGCGTGGCTTCCGGAAACACCGTTTTTCTCTTCAACTGCACCGCCCACGCGCCTTCGATGAACTGCTCCCCAAGCAGCGCGTGCCACAGCTATATTAAGGAGCACGCAGATTTCGGCGCGTGCGGGGCCGTGGGTGTGGGAGCGTGCTGCGAGTACCGAAGCGGCGGGGCCCGCAAAGAGTTCGCGATTCGTTTGCACGGCGGAGAGTGCGCGGCGTATGAGAGTTTTGTGGATTTTAACGGCACGGTGGCGACTGTGGGGAAGCGGTGGCCGGAGAGTGGGATGGGGATCGAGTGGGTGGCACCACAGGAACCGGTTTGTAAGGCTAGTGTAGATTGCAAGGAATTGTTGAACTCGAAATGTGGAGTGGGGCCCAGTGGTGGGGTGCAAAGGTGCTTCTGCAATGCTGGGTTCGGGTGGGACCCCATCAATGACATAACGTGCACAGGACATGGAAAAGACAGCCACTGCAAAGTTCGGAAGAAAAAGAAGATGCTTGTGCCTGTGGTTGTTTCCATAGGAGGAATAGTGTTTGTTCTAGCAATCACAGGAGTGATCTTCTACAAGAAGCATAACCAAGCAAAAAGAAAAGCAAAGGAGGCTAAAATGAATAAGAGAAAAAAAGAAGTCTCAAGTGTGAAAGCCAGTGCTTTATCATCAAGAATCTTCACTGGGAGAGAGATAAGAAAGGCAACGAACAATTTCTCCCCAGAAAATCTGATTGGAACTGGTGGTTTCGGTGAAGTGTTCAAGGGGACATTCGATGATGGAACCGTGTTTGCCATCAAGCGTGCGAAGCTCGGAAGCACCAAAGGCATTGATCAGATGCAAAACGAGGTTCGAATTCTGTGCCAAGTAAACCACAGAAGCTTGGTGAGACTCCTTGGTTGTTGCTTGGAACTTGAACACCCTTTGCTGATATACGAGTACGTTTCTAATGGGACCCTTTTTGATTACCTTCATCGCCACTCTTGTGGCACAAGGGAACCCCTAAAATTGCACCAAAGACTCAAAATTGCACACCAAACAGCCGAAGGGCTTTCATATCTGCATTCTTCAGCTGTGCCACCCATTTACCACCGAGACGTGAAATCAAGCAACATACTTCTTGATGACAAGCTTGATGCCAAGGTTTCTGACTTTGGCTTATCAAGGCTTGTTGAATTGGCTGAAGAAAACAAGAGCCATATATTCACTAGTGCTCAAGGTACATTAGGGTACCTAGACCCTGAGTACTATCGTAACTTTCAGTTGACTGATAAGAGTGATGTTTATAGCTTTGGAGTAGTGCTGATGGAGTTGCTCACTGCTCAGAAAGCCATTGATTTCAACAGGGAAGAAGAGAGTGTGAACTTGGCCATGTATGGGAAGAGGAAAATGATTGAGGAGAAGTTGATGGATGTGGTTGATCCTTTGCTTAAAGAGGGAGCGTGTGATTTGGAATTGGAAACTATGAAGTCATTGGGGTATCTCGCAGTTTCATGCTTGGATGATCAGAGGCAAAAACGGCCTTCCATGAAAGAAGTTGCTGATGAGATTGAAAACTTGATTAAAGTTGTTAAAGGTCAAGTTTCCAAATCATGA 1878 0.4915 MALLLSLAQATRKCGNCGPNPVPYPLSTGPDCGDPLYKIRCTAGILWFDALAGSSYAIRAIDPFTRRIITRPATLAPKSCVSTDFRSEGMHLNETLPFSVASGNTVFLFNCTAHAPSMNCSPSSACHSYIKEHADFGACGAVGVGACCEYRSGGARKEFAIRLHGGECAAYESFVDFNGTVATVGKRWPESGMGIEWVAPQEPVCKASVDCKELLNSKCGVGPSGGVQRCFCNAGFGWDPINDITCTGHGKDSHCKVRKKKKMLVPVVVSIGGIVFVLAITGVIFYKKHNQAKRKAKEAKMNKRKKEVSSVKASALSSRIFTGREIRKATNNFSPENLIGTGGFGEVFKGTFDDGTVFAIKRAKLGSTKGIDQMQNEVRILCQVNHRSLVRLLGCCLELEHPLLIYEYVSNGTLFDYLHRHSCGTREPLKLHQRLKIAHQTAEGLSYLHSSAVPPIYHRDVKSSNILLDDKLDAKVSDFGLSRLVELAEENKSHIFTSAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLMELLTAQKAIDFNREEESVNLAMYGKRKMIEEKLMDVVDPLLKEGACDLELETMKSLGYLAVSCLDDQRQKRPSMKEVADEIENLIKVVKGQVSKS 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04283 625 CDD STKc_IRAK 339 614 - -
Vimu6g04283 625 SMART serkin_6 333 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04283 625 Pfam Protein kinase domain 336 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04283 625 FunFam Wall-associated receptor kinase-like 20 409 624 - -
Vimu6g04283 625 Gene3D Phosphorylase Kinase; domain 1 291 408 - -
Vimu6g04283 625 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 305 408 - -
Vimu6g04283 625 Gene3D Transferase(Phosphotransferase) domain 1 409 624 - -
Vimu6g04283 625 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 11 614 IPR045274 GO:0007166
Vimu6g04283 625 Coils Coil 286 309 - -
Vimu6g04283 625 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Vimu6g04283 625 ProSiteProfiles Protein kinase domain profile. 333 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04283 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vimu6g04283 625 SUPERFAMILY Protein kinase-like (PK-like) 307 609 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04283 Vimu-Chr6 45694135 45697076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04283 13 625 Receptor kinase-like Gene Family AT5G02070 56.160 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu6g04283 Pkinase 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04283 - - aprc:113862410 1018.45