Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04279 ATGGAAGCCACTTCCATAACGTCGTTGTTGAAGGGCTTTTGTGATCACACACGATGGAAATATGCTGTTTTTTGGAAGCTTAACCACCATTTTCCTATGAATTTGACCTGGGAAAATGGTTACCAGAAAGGAAATGAGGATGAGGAAAGTATGTGGGATGAGGTCAATTTCAAATCCCCAGATGAGTTATATTCTTCAAGAGGTGAAAGTACTGATTATTCAGTTCGACTTCTCATGATTGAAATGTCCCATCGCAAATACAATTTGGGAGAAGGGGTTGTTGGTAAAGTAGCTCTTGCCAGGGATCATTTTTGGGTTTCCTGTGAGGATATTCTTACACCTAAATTTGACACTGATTTAATCACAGAGTGTCCTGATGAGTGGCTTCTTCAAATTGCATGTGGCATCAAGACTATTGTGCTTGTACCGGTTCTTCCACTAGGGGTTTTGCAGTTTGGTTCATTTGAAGAGGTTGCTGAAGACCTGGAATTCGTTACCACTGTGAAGGGTAAGCTCCAATCCGTTGATAGCATGGAAGCAAATATTACCCCTTTGAACATGGGAACTGATTATCAAGATTGGTCGGACCTAATGCATAATTTGATGAATAGCTTGGACGAATCATCTTCTGTTACTAAAACTATATGGAAAAGTGAAGTTTCAACCAGTACTGCTTCGAACAGTGCAAATGGTTCAACAAGGCTGAACCCAACAATGCTATCATTTATTCAAGATGACTGTTCTGTGTCAAGACAAAATCTACTAAAATCTCTGAAAAGAGAAAATGTCAATGAGATAGGTTCCTCTTCATTTGATATGTCAACTGTTCCTAGACATATTAGTAAGATGGAGACAAAACCAAATCACATGGAAGCAGAGATGTGGTCCTGGTCGGTTTTTGAAGAGATGTCAAACGGATTAGACTCTTTGTCTGTTAAAAATATGACAGAGAAACAGTTTGGTGGCACTGAAAGTGGTTACTATGATGCTAAGAATATCAATGACTTCACTTTTCCCTCAGAGTCAGAATTGCACAAAGCACTTGGATCAGTTGCATACTCTGTTGGTGAAGCATACCATACCTCATGTCTGATAACCAATAAAAAAGAGAGTGATCATATTAAAGGTTTTGAGTTTCCCGAAGATCTTGATCCTGAATATCTTTTAGATGCTGTTGTTGGCAATTTATGTAGTGCTGCAGATGATACTTCTAGTATTTCAAACAGTATCAGATCTTTTACAACTTTGCCAACAGAGATTAGTGGTTCCATTCCAAAAAATTATTCAGAAGAAAGCTACACTTTGATTGTGGATAATTCAGATGTGAAGAATGATCTTGTGCCTGCAGTTTCCTTCAAGAGAAAATATGAATTTTCCAATCATTTTACATCATCTTTTGATGGAAATGGAAGCTTATTGATTGATGAGGTGCCTCAGGAAAAGGAAGATATTCATATGCTTCCAATCAATGGACCAAAGCTCTCTAGCACAAACAAGAAAAGAACAAGAGTTGTTAACAACCAAAAGGCAAGGCCAAGAGATAGACAGCTTATCATGGACAGAATGAAGGAGTTGAGAGAACTCGTCCCAGATGGTGGAAGGTGTAGCATTGACAACCTCTTGGAACGGACCATAAAGCACATGCTCTACTTGAGAAAGATAACAAGTCAGGCCGAGAAACTGAAACGATTTGCCAATCGGACGGTTGGTGAGAGCAAAAGACAGAAAATGAACGGTAGCCACCCAGGAAGGAGCTGTGCATTTGACTTTGAAAGTGAACTAGCATGGCCTATAGTCATAGAAGATCTGGAATGCACAGGGCACATGCTCATTGAGATGATATGCAATGAGCATGGCCTTTTTTTGGAGATTGCTCAGGTGATCCGAAAGCTAGATGTTACCATCTTGAAAGGGATCTTGGAAAATCGTTCTAGCGACAGCTGGGCTTGTTTCATTGTTGAGGTTCCTAGAGGTTTTCACAGAATGGATGTTCTATGTCCATTACTGCATCTTCTGCAGCTGAGGAGAAACCCTATCTCATACAAAAGCTGA 2052 0.3977 MEATSITSLLKGFCDHTRWKYAVFWKLNHHFPMNLTWENGYQKGNEDEESMWDEVNFKSPDELYSSRGESTDYSVRLLMIEMSHRKYNLGEGVVGKVALARDHFWVSCEDILTPKFDTDLITECPDEWLLQIACGIKTIVLVPVLPLGVLQFGSFEEVAEDLEFVTTVKGKLQSVDSMEANITPLNMGTDYQDWSDLMHNLMNSLDESSSVTKTIWKSEVSTSTASNSANGSTRLNPTMLSFIQDDCSVSRQNLLKSLKRENVNEIGSSSFDMSTVPRHISKMETKPNHMEAEMWSWSVFEEMSNGLDSLSVKNMTEKQFGGTESGYYDAKNINDFTFPSESELHKALGSVAYSVGEAYHTSCLITNKKESDHIKGFEFPEDLDPEYLLDAVVGNLCSAADDTSSISNSIRSFTTLPTEISGSIPKNYSEESYTLIVDNSDVKNDLVPAVSFKRKYEFSNHFTSSFDGNGSLLIDEVPQEKEDIHMLPINGPKLSSTNKKRTRVVNNQKARPRDRQLIMDRMKELRELVPDGGRCSIDNLLERTIKHMLYLRKITSQAEKLKRFANRTVGESKRQKMNGSHPGRSCAFDFESELAWPIVIEDLECTGHMLIEMICNEHGLFLEIAQVIRKLDVTILKGILENRSSDSWACFIVEVPRGFHRMDVLCPLLHLLQLRRNPISYKS 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04279 683 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 306 678 IPR043561 GO:0003700|GO:0006355
Vimu6g04279 683 MobiDBLite consensus disorder prediction 488 510 - -
Vimu6g04279 683 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 169 IPR025610 -
Vimu6g04279 683 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 502 551 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04279 Vimu-Chr6 45545784 45551389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04279 316 677 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 34.527 9.07e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04279 - - gmx:100820605 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04279 6 45545784 45551389 Vimu6g04279 6 45545784 45551389 ECH