Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04257 ATGGAGGAGGGTCAATGTTTGATCAGGAGTAAGAGAAAGTACTCTTTGAGCTCTAGTCTTCATGGTTCTTGTACTGATTACCCTTCCTATGATGATCACTCATGGGAAGAGCAAGCCTTTGCTAAAGATGCTGCTTGGTCTGGTTGTGTGTGGCCACCACGATCATATTCTTGTACCTTTTGCACAAGGGAATTTAGGTCAGCACAAGCTTTAGGAGGTCATATGAATGTTCATAGAAGAGATAGAGCAAGACTAAAGCAGCCACATAGCCCTCAGAATGAAATCCTCAATTATGATCCTGAGAAAACTCAAGCCCAGAATTCGGTTCAAATTTCTTTCACTTCATTGGGTTACTTATACCCACCTTCTATCACTGGATTGCCTCATAACACTAACCCTAATTCTGATCCTTATTCTCATGTTGTTGCTTCACCTTCCAAAGTTTTAGGCACACCAGTTAACAAGAGATGCAGAGAGAAACCCCAGATTCCAGAATACAATAGTTCTTCAATTTACAAAGGATGTCATGAGTCTCCCCCTTCTCTTTCTTCCAAATCCTGGCCAAATTTAACTGATGACTTCAGATTTTGTTCCAGTAGGCTCGATCTTGAAGCTAGTGTTGAGAAAAAATTGCAGGGATTGGATTCTGGGTGTAGGAGTGAGGGTGATAAGGGTAAAACTGAGGTGGCTGTGAGCATGAACTTGTTTATGAGTCGAGCTCACCCAGTTGTGCAGTTTGAGAATAAAGAGACAGATACAAGTTTCAAGAAGAGAAAATCAGACACTTCATCCATTCCATTCTTCCCCAAATCATGTTCAGTTGATAAGGATCATGTGCAGTCAGAGATGTTTGATTTTAGCCCTAGCTCTATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGTCATAGGTCCGAGGTATAG 921 0.4169 MEEGQCLIRSKRKYSLSSSLHGSCTDYPSYDDHSWEEQAFAKDAAWSGCVWPPRSYSCTFCTREFRSAQALGGHMNVHRRDRARLKQPHSPQNEILNYDPEKTQAQNSVQISFTSLGYLYPPSITGLPHNTNPNSDPYSHVVASPSKVLGTPVNKRCREKPQIPEYNSSSIYKGCHESPPSLSSKSWPNLTDDFRFCSSRLDLEASVEKKLQGLDSGCRSEGDKGKTEVAVSMNLFMSRAHPVVQFENKETDTSFKKRKSDTSSIPFFPKSCSVDKDHVQSEMFDFSPSSIEELDLELRLGHRSEV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04257 306 Gene3D Classic Zinc Finger 52 112 - -
Vimu6g04257 306 PANTHER OS07G0101800 PROTEIN 29 303 - -
Vimu6g04257 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Vimu6g04257 306 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Vimu6g04257 306 Pfam C2H2-type zinc finger 56 80 - -
Vimu6g04257 306 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Vimu6g04257 306 SMART c2h2final6 56 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04257 Vimu-Chr6 44934990 44935910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04257 34 301 C2H2 Transcription Factor Family AT2G37740 31.290 2.96e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g04257 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04257 - - vra:106758996 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04257 6 44934990 44935910 Vimu6g04257 6 44934990 44935910 ECH
Vimu6g04257 6 44934990 44935910 Vimu1g01024 1 7465472 7466131 ECH