Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04256 ATGTCTTCTTGCTATTTCCCCTTCAGTTGCCAAAAAAAGATGGAATTCAACACCCCAATCTATAAGAAATCTGAGATAAGGTGGAGCTCAGATGATCAAGGTGGCCCTGGACAAGTGAAATCTTATTCTTGTTCCTTCTGCAAGAGAGGATTCTCTAATGCACAAGCCCTAGGTGGCCACATGAATATCCACAGAAGAGATAGGGCAAAGCTCAAGCAATCTTCTGAAGAAAGCTTGCTTTCGTTGGACATCTCAATCAAGACCTCAAGTGATCACAGTAATGACCCTTCTGATTTGGAAGAGAAAATTTTCTTTCGGTTGGGTTCTGGAGAAGATCAGAAGCATGCTAGAAATCGTAAAATGCCATTCAATTTCCCTCACAAAAGTGATCGTGATTATGCATCAGAAAGGGGCCATCTTCCTTCTTTTGTTTTGGGGCAGCGAATTGAAGAGAAGACAGCTGATTTAGACCTTGAACTTAGGTTAGGCCTTTATCCCCAGGAGTCAGCAACATTGAACACTAGATCGTTCTTTTGA 537 0.419 MSSCYFPFSCQKKMEFNTPIYKKSEIRWSSDDQGGPGQVKSYSCSFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEESLLSLDISIKTSSDHSNDPSDLEEKIFFRLGSGEDQKHARNRKMPFNFPHKSDRDYASERGHLPSFVLGQRIEEKTADLDLELRLGLYPQESATLNTRSFF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04256 178 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Vimu6g04256 178 Gene3D Classic Zinc Finger 22 97 - -
Vimu6g04256 178 PANTHER OS07G0101800 PROTEIN 22 166 - -
Vimu6g04256 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Vimu6g04256 178 SUPERFAMILY beta-beta-alpha zinc fingers 40 68 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04256 Vimu-Chr6 44898767 44899333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04256 38 171 C2H2 Transcription Factor Family AT3G53820 39.568 2.76e-19 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g04256 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04256 - - ccaj:109793777 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04256 6 44898767 44899333 Vimu6g04256 6 44898767 44899333 ECH