Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04250 ATGCTTAAACTCACCAACCACACCAGGCAACAAAAGGGTCATGCTTTCTTCCCAAGTCCAATAGACTTCAAGAACACCTCAAATGGAAGTGCGTCTTCTTTCTCCACCTCCTTTGTGTTTGCCATAAGTTCTGAGTATCCGAATTTGAGTGGTCATGGGATTGTTTTTGTGGTCTCTCCAACAAAAGGGCTTCCAAATTCTCTGCCAAGCCAGTACCTTGGCCTGTTTGATGACATCAATAATGGCAACACCAGCAACCATGTTTTTGGGGTCGAGCTTGATACCATTCAGAACACTGAATTTGATGTCAACGAATTGAAGTCCGTTAAGTCAGCTCCTGCAGGATATTACAGTGACGGGGAGGTTAAGAATTTGAGTCTCATCAGTGGCTACCCAATGCAGTTATGGGTGGAATATGATGCCCTAAAGAAGCAGATTGATGTTACTTTAGCTCCAATAAACATCGGCAAACCAGAAAGGCCTTTGTTATCTTTAAGCAAAGATCTTTCTCCAATTCTTAACAATGGCATGTACGTTGGATTCTCATCCTCAACTGGGTCAATTCAAAGTTATCATTATATTTTGGGTTGGAGCTTTAAGGTGAATGGCGAGGCTCAACAACTTGACATCTCTGAACTCCCCAAACTACCTAGACGAGGCAGTAAAGAACGGTTTGTTCATGTCATGAAAAGGAAGAAGTTCACGGAGCTGCTTGAAGATTGGGAGCAAGACTATGGTCCTCATAGGTTCAAGTACAAAGATCTTAGCCTGGCAACAAAGGGGTTCAGGGAGAAGGAGCTATTGGGAAGCGGTGGATTTGGCAGAGTGTACAAAGGTGTGATGCCAATTTCAAAACTTGAGGTTGCAGTGAAGAAGGTGTCCCATGAATCAAGACAAGGGATGAGAGAATTTGTGGCAGAAATTGTTAGCATTGGGCGTCTTAGGCACAGGAATTTGGTTCCCCTTCTGGGGTACTGCAGGCGGAAAGGAGAGTTGCTATTGGTCTATGACTACATGCCAAATGGAAGCCTTGACAAGTATCTCTATAACAAACCAAGAGTGACCCTAAATTGGAGCCAAAGATTTAGAATCACCAAAGGGGTTGCTTCAGGTCTGCTTTATCTACATGAGGAATGGGAGCAAGTTGTGGTCCACAGAGACATTAAGGCTAGTAATGTGCTACTTGATGCCCAATTGAATGGTGACCCTCATACTACTCATGTGGTTGGAACACTTGGGTACCTAGCACCAGAGCACACTAGAACAGGTAAGGCCACTACAAACTCTGATGTGTTTGCTTTTGGTGCATTTATGCTAGAGGTTGTTTGTGGAAGAAGGCCAATAGAGCAAGTGGGGTGTTCTGGGAGTGAAATTCTTGTTGATTGGGTGTATAATTGTTGGAAAAGAGGTGATATTCTTGAGGCAAGGGATCCAAATTTGGGCACAAATTATAAGGCAGAGGAAGTGGAGTTGGTGCTGAAACTAGCTTTGTTGTGCTCACATTCAGATCCTTCAGCTAGACCAAGCATGCGCCAAGTTGTTCAGTACTTGGAGAGAGATGTGCCTCTGCCAGACTTGTCTTTGCTTAGCTTATCTTCCACCGGCTTAAGATTTGGTCTGCATGAAGACTTTCAGGATTGTCCGATGTCTTATCCTTCATCCATGGATAGGCCAATCTCTCGCACTTCTTCAATTGCTGAGTCACTTCTCTCTGGTGGACGTTGA 1725 0.4417 MLKLTNHTRQQKGHAFFPSPIDFKNTSNGSASSFSTSFVFAISSEYPNLSGHGIVFVVSPTKGLPNSLPSQYLGLFDDINNGNTSNHVFGVELDTIQNTEFDVNELKSVKSAPAGYYSDGEVKNLSLISGYPMQLWVEYDALKKQIDVTLAPINIGKPERPLLSLSKDLSPILNNGMYVGFSSSTGSIQSYHYILGWSFKVNGEAQQLDISELPKLPRRGSKERFVHVMKRKKFTELLEDWEQDYGPHRFKYKDLSLATKGFREKELLGSGGFGRVYKGVMPISKLEVAVKKVSHESRQGMREFVAEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMPNGSLDKYLYNKPRVTLNWSQRFRITKGVASGLLYLHEEWEQVVVHRDIKASNVLLDAQLNGDPHTTHVVGTLGYLAPEHTRTGKATTNSDVFAFGAFMLEVVCGRRPIEQVGCSGSEILVDWVYNCWKRGDILEARDPNLGTNYKAEEVELVLKLALLCSHSDPSARPSMRQVVQYLERDVPLPDLSLLSLSSTGLRFGLHEDFQDCPMSYPSSMDRPISRTSSIAESLLSGGR 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04250 574 Pfam Protein kinase domain 262 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04250 574 Gene3D Transferase(Phosphotransferase) domain 1 339 522 - -
Vimu6g04250 574 FunFam L-type lectin-domain containing receptor kinase V.9 1 206 - -
Vimu6g04250 574 Gene3D - 1 214 - -
Vimu6g04250 574 CDD lectin_legume_LecRK_Arcelin_ConA 2 203 IPR001220 GO:0030246
Vimu6g04250 574 ProSiteProfiles Protein kinase domain profile. 262 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04250 574 ProSitePatterns Protein kinases ATP-binding region signature. 268 292 IPR017441 GO:0005524
Vimu6g04250 574 SMART serkin_6 262 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04250 574 FunFam L-type lectin-domain containing receptor kinase S.4 339 530 - -
Vimu6g04250 574 Pfam Legume lectin domain 2 214 IPR001220 GO:0030246
Vimu6g04250 574 SUPERFAMILY Protein kinase-like (PK-like) 243 529 IPR011009 -
Vimu6g04250 574 FunFam Lectin-domain containing receptor kinase A4.3 247 338 - -
Vimu6g04250 574 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 220 IPR013320 -
Vimu6g04250 574 Gene3D Phosphorylase Kinase; domain 1 247 338 - -
Vimu6g04250 574 CDD STKc_IRAK 268 519 - -
Vimu6g04250 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 383 395 IPR008271 GO:0004672|GO:0006468
Vimu6g04250 574 PANTHER - 5 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04250 Vimu-Chr6 44702065 44703936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04250 1 574 Receptor kinase-like Gene Family AT2G37710 61.058 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu6g04250 Pkinase 1.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04250 - - gmx:100783815 974.926