Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04239 ATGTCGTTGCACCGTGGTGAAGGAGATGAGCTCTACGAGCAGCTGTGGAAGGCGTGTGCAGGACCCCATGTGGAAATTCCTCGTGCAGGCCAAAGGGTCTTCTACTTCCCTCAGGGACACATGGAACAGAATGTTGGTGGTGGTGTTGTTGGATGCATGTTTTTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCCCTCCGAGATCCTTTGTCGTGTCGTCAACGTCCTTTTACTGGCCGAACCAGAAACAGATGAGGTTTATGCACAGATTACTCTGGTACCAGAAAATAATCAAACTGAGCCTACAAGCCCTGATCCGTGCCCTTCTGAAGTTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTCCTAACCGCCTCTGATACAAGCACTCATGGTGGCTTTTCTGTCCTTCGGAAGCATGCCACTGAATGTCTTCCAGCATTGGACATGTCGAAATCAACCCCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGATATGAATGGCGCTTTAAGCATATATTTAGAGGTCAACCGCGTAGACACTTGCTCACAACCGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTTTTTCTGAGAGGGAGCAATGGAGAACTGCGAGTTGGAGTGAGGCGTCTTGCTCCTGTTCAAAGCAGCATGCCATCATCTGTAATTTCTAGTCAGAGCATGCACCTAGGAGTTCTCGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGACAAGCCAGTTTATTGTAAGTGTGAACAAGTATTTAGAGGCTATCAACCAAAAGTGTAATGTTGGCATGAGATTGAAGATGAGGCTTGAAGGGGATGATTCTACTGAAACAGACAAAAGAATTTCGGGCACAATAATTGGAGTTGAGGATATTTCCCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAAACTCCATCTTTTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCATTCTGGCTTCGGTACCTACACCAATATCATCCCAACCTGTTGTTCTAAAGAATAAAAGGCCTCGACAAGCAACTGAAGTTCCAGATCTTGGAGACACAGCATTAATTGCTCCTACTTTCTGGGATCCTGGTCTGACACAGTCTGATATTACACAACTTGGTGTTATTGCCGAAAGCAAAAGGAGTGAAAGTACTGCTCACATGTGGCATCATAACAATAACAACAGCAGCAATATATCAATGAATCAGAGAAAAGCAAGTTGGCTGTCTTCTCCTTCTCATTTATATCTTGACACAAGTGATGATAGCAAGAGTATATCAGCTTCGCCTATTTCAAAAATTCACTCGGAAAGATTGAACAATGACCATTGCCTTGACCAGGTTGATAAGGAGATAAGCAATGTAGAGCCTGCAATAGGCTGCAGATTGTTTGGGATTGACCTTATTGATCATACAAAAAGCAACTCTCTTTCTGTAGATAATGCATCTGCATTCACATCTGAGGGCAGAACTGATGCAAACCATGAGTCTGATATGTCAAAGGCTTCTAAAGAATGGAAACAAGAACAGCTACAAGTATCGCCAAAAGAGACTCAAAACAAGCAAATTTGTAGCAGAAGTTGCACTAAGGTGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCTGTGGACTTGACCACATTGGATGGGTATGAACAACTTGTAGATGAATTGGAGAAGATGTTCGACATAAAGGGTCAGCTTCAACGCAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCGTGA 1893 0.4363 MSLHRGEGDELYEQLWKACAGPHVEIPRAGQRVFYFPQGHMEQNVGGGVVGCMFLEVSTNQELNQRIPLFKLPSEILCRVVNVLLLAEPETDEVYAQITLVPENNQTEPTSPDPCPSEVPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGSNGELRVGVRRLAPVQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINQKCNVGMRLKMRLEGDDSTETDKRISGTIIGVEDISPHWVNSKWRSLKVQWDETPSFPRPDRVSPWEIEPILASVPTPISSQPVVLKNKRPRQATEVPDLGDTALIAPTFWDPGLTQSDITQLGVIAESKRSESTAHMWHHNNNNSSNISMNQRKASWLSSPSHLYLDTSDDSKSISASPISKIHSERLNNDHCLDQVDKEISNVEPAIGCRLFGIDLIDHTKSNSLSVDNASAFTSEGRTDANHESDMSKASKEWKQEQLQVSPKETQNKQICSRSCTKVVQMQGVAVGRAVDLTTLDGYEQLVDELEKMFDIKGQLQRRNKWEIVFTDDEGDMMLVGDDPWP 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04239 630 FunFam Auxin response factor 288 361 - -
Vimu6g04239 630 Gene3D - 288 361 - -
Vimu6g04239 630 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 629 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu6g04239 630 Pfam AUX/IAA family 544 629 IPR033389 -
Vimu6g04239 630 CDD B3_DNA 125 227 IPR003340 GO:0003677
Vimu6g04239 630 FunFam Auxin response factor 125 229 - -
Vimu6g04239 630 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu6g04239 630 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Vimu6g04239 630 Gene3D - 558 630 - -
Vimu6g04239 630 ProSiteProfiles PB1 domain profile. 563 630 IPR000270 GO:0005515
Vimu6g04239 630 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Vimu6g04239 630 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vimu6g04239 630 SUPERFAMILY CAD & PB1 domains 568 629 - -
Vimu6g04239 630 Gene3D - 124 228 IPR015300 -
Vimu6g04239 630 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04239 Vimu-Chr6 44616642 44620296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04239 4 630 B3 DNA Binding Superfamily AT4G23980 57.233 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu6g04239 AUX_IAA 5.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04239 K14486 - gmx:100799088 1022.31