Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04236 CGACTAGTCCCAAAACCCACCTCACCAATTTTCTCACTCGAGAATTTTCCCGGAAAATTTCACCCTCTTCCATTTCCCAACCAAACAAAAACACATCAATTCTTTCTAATTCTTGCACAATCCAAACCAGAGAAATTAAAAATCATGGCTTCTTTGAGATCTTCTTCTTCGTTCTGGTGCTATCGATGCAACCGCGTCGTTAGGGTTTCCCTCGCCGCTGAAACGCAGCGAGATCCTACCATTCTCTGCCCCGATTGTCACTCCGGTTTTCTCGAAGAGGTACACACGCCTCCCCACTCGCGTCGATCCACACGCGCCGGCTCGCCCTTCAATCCCGTGATCATGCTGCGCGGCGGGAACGGAAACGAAAACGCAGGCGCCAACGAAACCGAAAATGATGTCGCCTCGGGGAACTTCGAGCTTTACTACAACGACGTCGTTTCGGGTCCGGGCCCCAGCGGTCTGCGCCCGCTGCCCGCAGGCGTCACCGACTTCCTCATGGGCTCGTCGGGCTTCGATCACTTGTTGGATCAGCTGGACGTCACCTCGGTGGGCCTTGACCGGGCAGCGTCGAAGGCGGCGATCGAGTCGATGCCGGTGGTGAAGATCCTGGCCAGCCACGCGCACGCGGAGTCCCATTGCGCGGTGTGCATGGAAAACTTTCAAGTGGATTGCGACGCACGTGAGATGCCGTGTGGGCACGTGTATCACTCGGAGTGCATCGTGCCGTGGCTGTCTGTGCGGAACTCGTGCCCCGTATGCCGCCGCGTGGTTCCTTCAGATGAGGTTGATGATAACAATACGATGGGGTTAACCATATGGAGACTCCCTGGGGGAGGATTCGCTGTGGGCAGGCTCATCGGTGGTAGAGAACTGCCCCTCGTGTACACGGAAATGGACGGCGCGTTTAACGCCTCTAACGGCGTTCCCAGGAGAGTCTCCTGGGATTCTTCTATTGGTAGGTCTAGGGAGAGTAGGGGCTTTGCTTCTGCTTTTCGGAATCTCGTTTCCTATTTTGGAAGAGTTAGGAGTTCCTTTTCTCGTGGAACGAGAAACTCTCGTCTTAATGGAAGATCACGCTCTGCCACAACCATTTTTTCTAGGTTCAGGAGTCGGTCAAGATTTTAA 1128 0.5452 RLVPKPTSPIFSLENFPGKFHPLPFPNQTKTHQFFLILAQSKPEKLKIMASLRSSSSFWCYRCNRVVRVSLAAETQRDPTILCPDCHSGFLEEVHTPPHSRRSTRAGSPFNPVIMLRGGNGNENAGANETENDVASGNFELYYNDVVSGPGPSGLRPLPAGVTDFLMGSSGFDHLLDQLDVTSVGLDRAASKAAIESMPVVKILASHAHAESHCAVCMENFQVDCDAREMPCGHVYHSECIVPWLSVRNSCPVCRRVVPSDEVDDNNTMGLTIWRLPGGGFAVGRLIGGRELPLVYTEMDGAFNASNGVPRRVSWDSSIGRSRESRGFASAFRNLVSYFGRVRSSFSRGTRNSRLNGRSRSATTIFSRFRSRSRF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04236 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 135 257 - -
Vimu6g04236 375 SMART ring_2 214 254 IPR001841 -
Vimu6g04236 375 Pfam zinc-ribbon 57 93 IPR039525 GO:0061630
Vimu6g04236 375 Pfam Ring finger domain 213 255 IPR001841 -
Vimu6g04236 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 261 IPR013083 -
Vimu6g04236 375 SUPERFAMILY RING/U-box 194 261 - -
Vimu6g04236 375 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Vimu6g04236 375 FunFam E3 ubiquitin-protein ligase RNF181 181 261 - -
Vimu6g04236 375 Pfam Protein of unknown function (DUF1117) 269 369 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04236 Vimu-Chr6 44451012 44454913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04236 145 264 C3H Transcription Factor Family AT5G01980 38.525 2.04e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04236 K11982 - gmx:100798563 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04236 6 44451012 44454913 Vimu6g04236 6 44451012 44454913 ECH
Vimu6g01825 6 16468482 16470875 Vimu6g04236 6 44451012 44454913 ECH