Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04233 ATGCAAAGGGGTAAGGTGAAGCTAGATGAGGATCTACGTCCTGATCGTGAGGATGATTTCCAAACAGATGATGAAGAAAATCAGGCACAAAGGGTGTTTGAACATTTGGATGATGATACTGATTCAGATAATTCACCTCCTTCACCAAGTTTGTCAAACGATGTTTCCATTATCTCTTGGCCTCAAAGCTATAGACAATCTATGGACATGTTAACTAGTGCAACACCTCCTGGAATTAATTTGTTAAAGAGATTTGGTTCAGTAGGGAGAGGAAATTCTCCCATTACATCATTCAAGAAATCTCAAGAACACGAAGAGGATTCTACCTTGTCTCTACCCCTTGTTTCTGAGACATGTGGATTCAAACAAGAGAATCGTCTTGCATCAGCACCGCGCCTGCAACCACTTAGCAGTGCAAAATTTTCTGTGGACGAATTGCCACCGCCACATGAACAATGTTCATATACAAAATCAGTAATTAATGGAACCAATATACTATGTGGAATAGGACTTCTTACCACTCCATATGCAATAAAAGAAGGAGGGTTTCTGAGCCTTGCAATACTTTTAATGTTTGCTATCATGTGTTGTTATACTGGGATGCTACTAATAAAATGTTTAGAAAGCAATGATGGACTCAAAACCTACCCAGATATTGGCCAAGCTGCTTTTGGAATTGTTGGTCGCTTGGGGATTGCAGCTTCTTGTGTTGAGTATATAATACTAGTCAGTGATAACCTCTCCTCACTATATCCTAACACCCAGATGAAATTTGGTGGGATTGATTTGAATTCTGAAGAAATTTATGCCATCACAGCAGCAATTCTTGTTCTACCAACAGTTTGGTTGCGAAATCTAAGCTTACTTTCTTATATTTCAGTTGGAGGAATATTTGCAACAATACTCGTTGCTCTTTGTTTGTTTTGGGTTGGGACAATGGACCAAGTTGTTGGATATAAGCCAGGAAAAAAGCTTTTAGACTTGGCAAACTTACCTGTCTCAGTTGGTCTCTATAGTTTTTGCTTTGCTGGCCATGCTGTTTTTCCTAACATCTACTCTTCTATGAAGGAACCATCCAAATTCCCATCAGTGTTATTTGTCTGCTTTGGCTTTTGCACTTTCATGTACATGAGTGTGGGAATAATGGGCTACTTAAGATTTGGTGACTTAGTTTCATCTCAGTTTACCTTGAACATGCCTAAAGAATTATATGCATCTGAGATTGCAACTTGGACAACGGTTGTGACTCCATTGGCAAAATATGCCTTAACGTTATTGCCGATTGCATTGAGCATAGAGGAACTAGCCACCTCTCCTAGACTAAGATGCCATGCTATGTCGGTTCTTGTCAGAACAATTTTAGTGATTTTAAGCTTACTTGTTGCTCTCTATATTCCATATTTTGGTTCTTTGATGGCACTAATTGGTTCCTTCTTGTCAATACTAGTTGCACTTATTTATCCATGTGCATGTTTCCTCAAGTTACATAGAGGGAGATTATCAAATGCAGAGATAACAATTTGTGGTATTATAATTGTTGTTGGGCTAATATCCGCTTGTATGGGAACGTTGTCAGCTGTTTCAAAAATAACTGGGGAAGGGGACTGA 1608 0.3893 MQRGKVKLDEDLRPDREDDFQTDDEENQAQRVFEHLDDDTDSDNSPPSPSLSNDVSIISWPQSYRQSMDMLTSATPPGINLLKRFGSVGRGNSPITSFKKSQEHEEDSTLSLPLVSETCGFKQENRLASAPRLQPLSSAKFSVDELPPPHEQCSYTKSVINGTNILCGIGLLTTPYAIKEGGFLSLAILLMFAIMCCYTGMLLIKCLESNDGLKTYPDIGQAAFGIVGRLGIAASCVEYIILVSDNLSSLYPNTQMKFGGIDLNSEEIYAITAAILVLPTVWLRNLSLLSYISVGGIFATILVALCLFWVGTMDQVVGYKPGKKLLDLANLPVSVGLYSFCFAGHAVFPNIYSSMKEPSKFPSVLFVCFGFCTFMYMSVGIMGYLRFGDLVSSQFTLNMPKELYASEIATWTTVVTPLAKYALTLLPIALSIEELATSPRLRCHAMSVLVRTILVILSLLVALYIPYFGSLMALIGSFLSILVALIYPCACFLKLHRGRLSNAEITICGIIIVVGLISACMGTLSAVSKITGEGD 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04233 535 Pfam Transmembrane amino acid transporter protein 153 524 IPR013057 -
Vimu6g04233 535 MobiDBLite consensus disorder prediction 1 15 - -
Vimu6g04233 535 MobiDBLite consensus disorder prediction 1 55 - -
Vimu6g04233 535 PANTHER OS05G0424000 PROTEIN-RELATED 161 515 - -
Vimu6g04233 535 MobiDBLite consensus disorder prediction 25 42 - -
Vimu6g04233 535 FunFam Amino acid transporter AVT1A 151 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04233 Vimu-Chr6 44432331 44436212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04233 6 533 Amino Acid or Auxin Permease AAAP Family AT5G02180 48.370 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04233 K15015 - qsa:O6P43_016746 600.897