Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04222 ATGTCAAAGACAATGATGGAGGAAGTAATGGCAACTTGGTCAGAGGGGTCAGAGGAAGATGAGCTTGTGAGAGAGCTTTTGGATGATGGGTCTCCCCTTCTTATGGTGCCTCAGGAGCAAATTCAAAACCCCACAACAAAACCCTCTTCAACTCACCATGCCTTCAATAGCTTCCTCTCCAACATTTACTCAGGTCCTACTATCTCAGATATTGAAAATGCTTTGTCAGTCACCAACCAAAGAGACCACTTCCCACCACTCTCATCACCCAGAGTTTCCATATTGGAGAGGGGTTTGAGCAAGATTGAGAATAAGTATACCCTCAAAATCAAATGCTTTGGCAATGGGATGGGAGATGATGGATATAAGTGGAGGAAGTATGGACAGAAATCCATTAAGAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACAAACCCAAGGTGCAGTGCCAAGAAGCAGGTTGAGAGATCCATTGAGGACCCAGATACTCTTATCATAACCTATGAAGGGCTCCACTTGCACTTTGCTTACCCATATTTTCTCATGGGCCAACCCAACCCATCTCAATCCCATCAACCCATCAAGAAATCCAAGCCCAATTCTTCACAGGACCAAGCCCAAGCCCATATAGAAGATTATGTTCACGAGGCCCAATCAAGTGCCACTTCTGGTGTGCTGCCATCCACTTCATTGGACTCTCCACAAGACATGGCCCAGGAAAACATGGGCTCACAAGGGTTGCTTGAAGACATGGTGCCATTCATGGTTCGGAACCCAGCAAACAGTGTGAGCAGTTCTCACACAAATTTTTCCTGTTCTTCGTTTCGTTCTCCTCCAACATCACCTCTGTGGCTTAAATTCTAG 867 0.4567 MSKTMMEEVMATWSEGSEEDELVRELLDDGSPLLMVPQEQIQNPTTKPSSTHHAFNSFLSNIYSGPTISDIENALSVTNQRDHFPPLSSPRVSILERGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSIEDPDTLIITYEGLHLHFAYPYFLMGQPNPSQSHQPIKKSKPNSSQDQAQAHIEDYVHEAQSSATSGVLPSTSLDSPQDMAQENMGSQGLLEDMVPFMVRNPANSVSSSHTNFSCSSFRSPPTSPLWLKF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04222 288 Pfam WRKY DNA -binding domain 119 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g04222 288 SMART WRKY_cls 118 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g04222 288 ProSiteProfiles WRKY domain profile. 113 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g04222 288 MobiDBLite consensus disorder prediction 187 207 - -
Vimu6g04222 288 FunFam WRKY transcription factor 105 179 - -
Vimu6g04222 288 SUPERFAMILY WRKY DNA-binding domain 116 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g04222 288 Gene3D WRKY domain 114 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g04222 288 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 89 206 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04222 Vimu-Chr6 44180161 44182498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04222 6 259 WRKY Transcription Factor Family AT5G43290 43.011 3.03e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g04222 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04222 - - gmx:100803946 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04222 6 44180161 44182498 Vimu6g04222 6 44180161 44182498 ECH