Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04213 ATGCAAAGATTGGTCATAATGGATCCACGTCTTTGTGGGTTTAGTGGTCCCCCTAATGAAGTCCGGTTAGGAAATCAGAGATTTGAAAATGGTTTCTTTGATCAAAGTAGGGACTTTGGTTACCTTCAATCCAATCTAGTTCCTTCCAAGACGCCTTCTTCGTCCTCGGTTTTGACTCACGAGGAACCTTCTCCGGAGGAATGTGAATTTTCTGATGCAATTTTGAGTTACATCAGTCAGATCCTTATGGAGGAAGACATGGAAGATAAGACGTGTATGCTGCATGATTCTTTGGATCTTCAAATTGCTGAGAGATCATTCTATGAGGTGATAGGTGAAAAGTACCCTTCTTCGCTTTTAGGAAATCCAAGTCCTGTTGATCCAGGTGGTGGGGTTGGGGATCATAATTTCTCTGAAGATTATGGTACCTGTTCTTACAATGATGGTGACCTCAGTAGCATTTTTACTAATTTTCGTCAAAATTTGGGGGAACTCCCTAACCATAAATTACGAGGCAATAGCATTTCACAGTCATCTTGTAGCTCTTCAAATAGTGTGATAAGTAGTGTGGAAGGACCTGTGGACTCTCCAAGCAGTATTCTCCAGGTTCCTGATCTGAACAGTGAGAGTCAATCCATTTTGCAATTTCAGAAGGGTGTTGAGGAAGCTAGCAAGTTTCTTCCAAGTGGAAATGATCTCTTTGCTAATTTGGGTGTGGCTAATTTTTCAAAAGTAGAGCCTAAAATGGGGTGCGATGAATTGTCAGTTAAGGTTGAGAAGGATGTGGGGGTGTCTTTTCTTGCTGGGTCCAAAGGAAGGAAACATCATCTCAGGGAAGAGGTGGATGTTGAAGAAAATAGAAGCAGCAAGCAAGCTGCAATTTTCTCTGAACCTACATTGACATCATCTTCTATTGATGTAATCCTGCTTCATAGTTTAGGGGATGGTAAGAAGGTTTTGATGGCCCGTCGTGAGGCTTTGCAAACTAAGAATGACAAGATAGCACTGTCAAATGGTAAATCAAAGGCTCCCAACAGTGGTAAGGGACGTAGTAAGAAACAAAGTGGGAAAAAGGAAGTGATTGATTTGAGAACACTTTTGGTTCTTTGTGCACAAGCTGTTGCAGCAGATGACTATAGTGGCGCACATGAGTTTCTAAAGCGGATCAGGAAGCACTCAAGCCCTTTTGGGGATGGAAATCAGAGGTTGGCCCATATCTTTGCTGATGGCCTTGAAGCGCGTTTGGCTGGGACTGGTAGCCAAATTTATAAAGGACTTGTTAGCAAAAGAACATCAGCTTCTGATTTTCTGAAGGCCTATCATCTGTATCTTGCTGCTTGCCCATTTAGGAAGATGTCTAGTTTTATCTCTAATGTCACAATAAGAGAATCTTCCACAAATTCAGCAAGAGTCCATGTTATAGATTTTGGTATCCTTTATGGTTTCCAATGGCCTACTTTTATTCAGAGACTTTCATTAGTAGTTGGAGGACCACCTAAACTTCGAATTACAGGAATAGACTTCCCACAACCTGGTTTCAGGCCTGCTGAGAGAATTGTAGAAACTGGACGCCGCTTGGCAGCTTATGCTGAATCATTTAAGGTGCCATTTGAGTATAATGCTATAGCAAAAAAGTGGGAAACAGTTCAGCTTGAGGAACTGAAGATTGATAGGGAGGAATACCTTGTTGTCACCTGTTTTTATCGTGGTAAAAATGTGCTTGATGAATCTGTGCTCGTGGACAGTCCGAGGAACAAATTCCTCAGTTTGATAAGGAAGATCAACCCGGATTTATTCATTCATGGCATTACTAACGGGGCCTTTAATGCGCCTTTCTTTGTTACTCGATTCAGGGAGGCACTGTTTCACTACTCTTCACTTTTTGACATGCTTGAAACTATTGTGCCTCAAGAGGACTGGGAGAGGATGCTAATAGAGAAAGAGATTTTTGGCAGGGAAGCATTGAATGTCATAGCTTGTGAAGGGTGTGAGAGAGTAGAGAGGCCAGAGACATATAGGCAGTGGCAAGCCCGGATTCTTAGGGCTGGATTTTCGCAACAATCTTTTGAACATGCTTTAGTAAAGAGGGCAATAGAGAAAGTATCAACTAGCTACCACAAGGATTTTGTTATTGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGAAGGGGCGGATTGTTTATGCCCTTTCTTGTTGGAAACCAGCATGA 2211 0.4211 MQRLVIMDPRLCGFSGPPNEVRLGNQRFENGFFDQSRDFGYLQSNLVPSKTPSSSSVLTHEEPSPEECEFSDAILSYISQILMEEDMEDKTCMLHDSLDLQIAERSFYEVIGEKYPSSLLGNPSPVDPGGGVGDHNFSEDYGTCSYNDGDLSSIFTNFRQNLGELPNHKLRGNSISQSSCSSSNSVISSVEGPVDSPSSILQVPDLNSESQSILQFQKGVEEASKFLPSGNDLFANLGVANFSKVEPKMGCDELSVKVEKDVGVSFLAGSKGRKHHLREEVDVEENRSSKQAAIFSEPTLTSSSIDVILLHSLGDGKKVLMARREALQTKNDKIALSNGKSKAPNSGKGRSKKQSGKKEVIDLRTLLVLCAQAVAADDYSGAHEFLKRIRKHSSPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTSASDFLKAYHLYLAACPFRKMSSFISNVTIRESSTNSARVHVIDFGILYGFQWPTFIQRLSLVVGGPPKLRITGIDFPQPGFRPAERIVETGRRLAAYAESFKVPFEYNAIAKKWETVQLEELKIDREEYLVVTCFYRGKNVLDESVLVDSPRNKFLSLIRKINPDLFIHGITNGAFNAPFFVTRFREALFHYSSLFDMLETIVPQEDWERMLIEKEIFGREALNVIACEGCERVERPETYRQWQARILRAGFSQQSFEHALVKRAIEKVSTSYHKDFVIDEDSQWLLQGWKGRIVYALSCWKPA 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04213 736 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 289 727 IPR005202 -
Vimu6g04213 736 MobiDBLite consensus disorder prediction 331 350 - -
Vimu6g04213 736 ProSiteProfiles GRAS family profile. 354 734 IPR005202 -
Vimu6g04213 736 MobiDBLite consensus disorder prediction 331 357 - -
Vimu6g04213 736 Pfam GRAS domain family 363 734 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04213 Vimu-Chr6 44080959 44084716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04213 66 735 GRAS Transcription Factor Family AT2G37650 52.256 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu6g04213 GRAS 2.9e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04213 - - gmx:100801824 1254.58