Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04209 ATGGCTGCCATTGTTTTCTTCCACATTGCTTCACTGGTCTCTCTTTTTGTTTCAACAAGTGCAAGAATCCCTGGAGTTTACACTGGTGGCTCCTGGCAGAGTGCTCATGCCACTTTCTATGGTGGCAGTGATGCCTCTGGAACAATGGGTGGTGCTTGTGGGTACGGGAATCTGTACAGCCAAGGCTACGGCGTGAGCACGGCGGCGCTGAGCACAGCACTGTTCAACAACGGTTTGAGCTGCGGCGCGTGCTTCGAGATCAAGTGCGACCAGGATCCGCGGTGGTGCAACCCCGGCAACCCTTCGATCTTGATCACTGCCACCAACTTCTGCCCTCCCAACTTCGCTCTTCCCAATGATAATGGTGGCTGGTGCAACCCTCCTCGCCCCCACTTCGACCTCGCCATGCCAATGTTCCTCAAGATCGCCCAGTACCGCGCCGGAATCGTCCCCGTCGCATATCGCCGGGTGGCATGCAGAAAGACAGGAGGCATCAGATTCACAATCAACGGTTTCCGTTACTTCAACCTGGTGCTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGCGCGTGAGTGTTAAAGGAAGCAAAACCGCATGGATGAGCATGAGCCGTAACTGGGGGCAAAATTGGCAATCGAACGCGGTTCTGGTGGGCCAGGCCCTCTCCTTTAGGGTTACCGGCAGTGACCGTCGCACATCAACCTCGTGGAACGTGGCATCACCTAATTGGCAGTTCGGACAAACCTTCACCGGGAAGAATTTCAGGGTTTAA 777 0.5547 MAAIVFFHIASLVSLFVSTSARIPGVYTGGSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVSTAALSTALFNNGLSCGACFEIKCDQDPRWCNPGNPSILITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVACRKTGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSKTAWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNVASPNWQFGQTFTGKNFRV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04209 258 SMART dpbb_1 67 154 IPR007112 -
Vimu6g04209 258 Gene3D - 164 256 IPR036749 -
Vimu6g04209 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Vimu6g04209 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Vimu6g04209 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Vimu6g04209 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Vimu6g04209 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Vimu6g04209 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Vimu6g04209 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Vimu6g04209 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Vimu6g04209 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Vimu6g04209 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Vimu6g04209 258 Gene3D - 18 160 IPR036908 -
Vimu6g04209 258 CDD DPBB_EXPA_N 32 159 - -
Vimu6g04209 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Vimu6g04209 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Vimu6g04209 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Vimu6g04209 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Vimu6g04209 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Vimu6g04209 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Vimu6g04209 258 FunFam Expansin 21 160 - -
Vimu6g04209 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Vimu6g04209 258 Pfam Expansin C-terminal domain 165 241 IPR007117 -
Vimu6g04209 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Vimu6g04209 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Vimu6g04209 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Vimu6g04209 258 PANTHER EXPANSIN-A15 19 256 IPR002963 GO:0009664
Vimu6g04209 258 FunFam Expansin 164 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04209 Vimu-Chr6 43861051 43863458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04209 3 258 Expansin Gene Family AT2G39700 82.031 6.20e-159 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04209 - - gmx:547955 531.946