Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04208 ATGCTAGGTCATCTCACTGCCAAGAGTGACGTATATAGTTTTGGAGTAGTTCTTCTGGAAATGATATCGGGAAGACGAGCCATAGACAAGAACCAGCCATCTGGGGAGCATAACCTTGTTGAATGGGCAAAACCTTACCTATCTAATAAACGAAGAGTTTTCCGTATAATGGATCCACGTTTGGAAGGTCAATATTCACATACTCGAGCTCAAGCAGCAGCTGCACTTGCCATGCAATGTCTTTCTGTAGAGTCCAAGTGTAGGCCAACTATGGATGAGGTGGTAAAAGCATTGGAGCAGCTTCAGGAATCAAAGGACATGCAGAGAAAAGGTGCTGATCATAAACATCATCATGTGCGCAATTCCGGCCAAGGCCGATCCACCGGCACCCATGGTGGTGCAGATGTGCCTAGAATTGCTTCTGCTTATCCTAGACCTACAGCTTCTCTCCTTGGCGGTTGA 462 0.4654 MLGHLTAKSDVYSFGVVLLEMISGRRAIDKNQPSGEHNLVEWAKPYLSNKRRVFRIMDPRLEGQYSHTRAQAAAALAMQCLSVESKCRPTMDEVVKALEQLQESKDMQRKGADHKHHHVRNSGQGRSTGTHGGADVPRIASAYPRPTASLLGG 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04208 153 MobiDBLite consensus disorder prediction 105 153 - -
Vimu6g04208 153 PANTHER OS01G0588500 PROTEIN-RELATED 2 102 - -
Vimu6g04208 153 Gene3D Transferase(Phosphotransferase) domain 1 1 127 - -
Vimu6g04208 153 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04208 153 SUPERFAMILY Protein kinase-like (PK-like) 4 103 IPR011009 -
Vimu6g04208 153 Pfam Protein tyrosine and serine/threonine kinase 4 98 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04208 Vimu-Chr6 43786704 43787165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04208 1 108 Receptor kinase-like Gene Family AT4G02010 46.296 4.34e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu6g04208 PK_Tyr_Ser-Thr 1.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04208 - - gmx:100819620 261.151