Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04201 ATGCATCACACGCGTAACGGTAATTCACGGCGACGTCACCTCAGAGAAGAGAGAGAGAAAGGAGAGAAGGCATCTTGGTCTCTCTTCTATGAGCTTCACTTCGATTCCCGCCACTTCTCTGAAAGCATAGTTTCCTTTTGCTACAAAGGACTCCGAATAGATTTTGTTTGGGTGTGGCGTTACCATGTTTCATGTGAGAATTTTGTTTGGAGGGGTGTTGAAGGTTTTGATCTGATGATAGATTTTAAGATCTGGGTTCTGTTTATATTTGTGTATCACTGTGAAAGTTTAGAAAATTTTCAATTTGAGCTGGGTTTTTGGGATGTTTTGATGATTGACGATTTTGAGCTCTTGAAGCATATGGCTGAAGTGGTGAAATCCGAGGAGTGTTGCCAAGAGAATAAGCAGTCCACGGCTGCTTCCTGCTCCTCTGTCTCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCTGGGATATGTAGCCCTGCATCCACATCACCTTCCCATCGGAGGACCACTGGTCCTATCAGGCGTGCTAAGGGTGGTTGGACAGCACAGGAGGATGAAACATTAAGGAATGCTGTGGCAGTTTTTAAGGGAAAAAGTTGGAAGAAAATAGCTGAGTTTTTTCCTGATAGATCAGAAGTCCAGTGTTTGCATAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCCTGGACACAGGAGGAGGATGATAAAATTGTTGAATTGGTGACAAAATATGGGCCAACAAAATGGTCTTTGATAGCCCAGTCTTTACCTGGTCGAATAGGCAAACAATGTCGAGAGCGGTGGCACAATCATCTTAACCCTGAGATAAAGAAGGATGCCTGGACTTTGGAGGAGGAATTAGCCCTGATGAATGCTCATCGCATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCAAGGAAGGACTGATAATGCAATAAAGAATCATTGGAATAGTTCTTTAAAGAAAAAGTTAGATTTTTATTTAGCTACCGGAAGACTTCCACCAATTCCCAAGAGTAGTCCACAAGTTCCTGTTAAAGATACAATTAGACGTTCTGCTAGTAAATCAATACTTGTTTATTCAAATAAAGAATTAAATGCAGCTGTTGAAACATCCTCTGAAACTACGGCCATCAGTAAACTAGATGACAGTGGCAGGAATCAATTTGAGACCTCGGGAACAGTAAGAGAAGTTGGTGATTCTTCAAGTGTTCCTGCAAATGAATCCGCCGATTCTGACTGTGTAGAATGCAAGCCTGGATCTTCCAACATCGATCTTAGCTGTAGCAACTCAGAACAAGTGTCAAAAGCTAATTGGGCAATAACTTATGGGCCAAGACCTGACAATTCTGGACTCAATGGAAACTCAACTTGTGAACATTGTACAAACAATGGTAACATGAACACTACAAGGTTAATTGGAACGTCTTTGCAAGAAAGTCCAACCTGTGGTTCTCTGTGTTATGAGCCACCACAGTTACATGGTTCAGTTCCCATAGATTCTCTTTATTTAAATTATATCTGCCAGCAGAATGAGTTTTGTTCGAGTCCAACCTTGTCACCTCTTGGTTTCTTCACTCCACCTCGTGTAAAGGGTGATGAATTATGCACTGAGACACCTGAATCAATTTTGAAAAGGGCTGCCAATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGGAAAACTGGGTTCCAAGCACTCACTAGTCCTAGTAAAGTTTTGAAGGTAGATAATGATACACGTTCTTCTAATGAAACAGAGAGAACCAATGATGATTCTGGTTCTAGGCATTTCTCCAGCAGTCCGGCAAGCCATGGCAATGTGATTGACATTCCCAGTAATAAGACATTCAATGCATCTCCCCCATATAGGTTAAGATCCAAGCGAACAGGGATTGTTAAGTCAGTGGAGAAACAACTGGAGTTTGCTTTTGACAAAGAGAAGAATGATGACAAGAGAAGCAATGTCATGACAGAAGATTGTCTCCATGAAAAAAAATTGGTTGCCACGTAG 2043 0.4165 MHHTRNGNSRRRHLREEREKGEKASWSLFYELHFDSRHFSESIVSFCYKGLRIDFVWVWRYHVSCENFVWRGVEGFDLMIDFKIWVLFIFVYHCESLENFQFELGFWDVLMIDDFELLKHMAEVVKSEECCQENKQSTAASCSSVSEGSGSAIHKSPGICSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAVFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVTKYGPTKWSLIAQSLPGRIGKQCRERWHNHLNPEIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLQGRTDNAIKNHWNSSLKKKLDFYLATGRLPPIPKSSPQVPVKDTIRRSASKSILVYSNKELNAAVETSSETTAISKLDDSGRNQFETSGTVREVGDSSSVPANESADSDCVECKPGSSNIDLSCSNSEQVSKANWAITYGPRPDNSGLNGNSTCEHCTNNGNMNTTRLIGTSLQESPTCGSLCYEPPQLHGSVPIDSLYLNYICQQNEFCSSPTLSPLGFFTPPRVKGDELCTETPESILKRAANTFPNTPSILRRRKTGFQALTSPSKVLKVDNDTRSSNETERTNDDSGSRHFSSSPASHGNVIDIPSNKTFNASPPYRLRSKRTGIVKSVEKQLEFAFDKEKNDDKRSNVMTEDCLHEKKLVAT 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04201 680 MobiDBLite consensus disorder prediction 158 172 - -
Vimu6g04201 680 MobiDBLite consensus disorder prediction 588 604 - -
Vimu6g04201 680 MobiDBLite consensus disorder prediction 578 633 - -
Vimu6g04201 680 Gene3D - 179 231 - -
Vimu6g04201 680 CDD SANT 286 329 IPR001005 -
Vimu6g04201 680 MobiDBLite consensus disorder prediction 149 183 - -
Vimu6g04201 680 FunFam Transcriptional activator Myb isoform A 232 284 - -
Vimu6g04201 680 SUPERFAMILY Homeodomain-like 229 325 IPR009057 -
Vimu6g04201 680 MobiDBLite consensus disorder prediction 381 421 - -
Vimu6g04201 680 PANTHER MYB PROTEIN-RELATED 180 252 - -
Vimu6g04201 680 ProSiteProfiles Myb-like domain profile. 175 226 IPR001005 -
Vimu6g04201 680 MobiDBLite consensus disorder prediction 381 418 - -
Vimu6g04201 680 Gene3D - 285 343 - -
Vimu6g04201 680 FunFam Transcriptional activator Myb isoform A 179 231 - -
Vimu6g04201 680 CDD SANT 183 226 IPR001005 -
Vimu6g04201 680 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 227 282 IPR017930 -
Vimu6g04201 680 Pfam Myb-like DNA-binding domain 180 226 IPR001005 -
Vimu6g04201 680 Pfam Myb-like DNA-binding domain 284 327 IPR001005 -
Vimu6g04201 680 Pfam Myb-like DNA-binding domain 232 278 IPR001005 -
Vimu6g04201 680 SMART sant 283 331 IPR001005 -
Vimu6g04201 680 SMART sant 231 280 IPR001005 -
Vimu6g04201 680 SMART sant 179 228 IPR001005 -
Vimu6g04201 680 FunFam Transcription factor MYB3R-2 285 349 - -
Vimu6g04201 680 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 180 226 IPR017930 -
Vimu6g04201 680 Gene3D - 232 283 - -
Vimu6g04201 680 ProSiteProfiles Myb-like domain profile. 279 329 IPR001005 -
Vimu6g04201 680 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 283 333 IPR017930 -
Vimu6g04201 680 MobiDBLite consensus disorder prediction 605 633 - -
Vimu6g04201 680 SUPERFAMILY Homeodomain-like 177 233 IPR009057 -
Vimu6g04201 680 ProSiteProfiles Myb-like domain profile. 227 278 IPR001005 -
Vimu6g04201 680 CDD SANT 234 278 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04201 Vimu-Chr6 43599718 43618326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04201 111 672 MYB Transcription Factor Family AT3G09370 47.461 1.34e-154 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g04201 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04201 K09422 - gmx:778081 1018.84