Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04193 ATGGGTAACCTAATCGGCAACCTCTGCCTCTGTTCCTCCGGTGACCGCTCCGGAAGGTTCGAGAACAGAGCTTCCTTCCTTTCCAAGCAAAACCAGAACTCCCTCGGAAACTCTATTTGCTATGTGAGACCCGACACGTGTCGGTTCTCCAGCGAGGCTTTTTCTGACGATGATGACACCCTCATCACTTTCCGGTCGGTTTCCGGCGCCACAGTGAGTGCAAACACGTCGGCGACGCCTTCAACTTCGCTCGATGATTCACTCCAACACAGCACCGTTTTGGATTCCTCTGCCTCGTTTGAGAGCTCTGGCTCCTTCACTTCCACCTTGGTCCCTTTTCAGCATCAACACGTTCATCGTGGATTCTCTTTGGGAGGGTGCGCTGAAAGAGGGTTATATTGGGGTCCTCGTGATCATGTGATGAACGATGAAGGATCCATCGAGAAAGATTCTTCTGAGGTAGCAATGAACAAGGGAAAGGGAAGTAGAAGACATTGGAAAAAGTTTCTGAGTAAGATTTCCATTGGGGGAATGTCTATTTTCAAGAAAAATGATAATACCAATGCGAGAGTAAGTTGCAGTACTAGTTTGAGTGCCGAGACGAGTATGCATGGTGTTGAGGTTGATGATAACTATTTGGATAGTGATGTGTTGATGGGGTGTGAGAATCTTCATTGGGCTCAAGGGAGAGCTGGTGAGGATCGTTTGCATATTGTGATTTGTGAGGATCATGGATGGGTTTTTGTGGGGATTTATGACGGGTTTAATGGCCCTGATGCCACTGATTTTCTTCTCAACAATTTGTTTTATGCTGTGAATGATGAGCTCCAGGAGATGTTGTGTGGTCACAACAAGTTTGAGCTCAAGGATTCAGACTCTTTGGAGCTGAGGGAGAAGGTGTTGTTTAGGGGAAATGGAGTGGTTTATGGTTGTTGTTCTTCAGGTGATAATAGAGATAATTATCCAATAGAAAATGGAGAGTTAAATTTGGAATGTGTATCAGAAGGAGTAGAGGGAATGAATGAGATAAACAGTGAAAGAGTAGATTTGAGTCATTCGGATGTGTTACAGGCTCTTTCAGAGTCACTGAGGAAGACTGAGGATGTATTCATGAGGACTGCTGAAGAGATGATTGGTCAAAACCCTGTGTTGGCTATGATGGGTTCTTGTGTTTTGGTGATGTTGATGAAGGGTCAAGATGTTTACCTGATGAATGTTGGAGATAGCCGTGCTGTGTTGGCCACTCACAGTGGGAAATCTCTTCAGCTCACCGAGGAGCATAGCACTCACGTGAAAGAGGAGGTTTACAGAATCAGGAGGGAGCATCCTGATGACCCTTTAGCAGTAACTAGAGGCCGAGTGAAAGGTCGCTTGAGTGTCACAAGGGCTTTTGGGGCAGGGTTCCTTAAGCAGCCTAAGCAAAACAATGCAGTATTAGAGGCTTTCAGAGTGAGCTACATAGGGGAATCTCCATACATCACATGTTTCCCTTCACTCCACCACCACAAGCTCAATCCAAATGACAAGTTCCTCATACTGTCTTCAGATGGACTCTACCAATACTTCACCAATGAAGAAGCAGCTGCCAAAGTAGAGTCATTCATCACCATGTTTCCTGATAGGGATCCTGCACAACTTCTCATTGAAGAAGCACTGGGTCGAGCAGCAAAAAGGGCTGGTTTGGAGTTCCATGAGCTGCTTGATATTCCACAGGGGGAACGCCGTCATTACCATGATGACATTTCTATTGTCATAATCTCCTTAGAGGGAAAAATTTGGCGTTCATTGGTGTAA 1794 0.4565 MGNLIGNLCLCSSGDRSGRFENRASFLSKQNQNSLGNSICYVRPDTCRFSSEAFSDDDDTLITFRSVSGATVSANTSATPSTSLDDSLQHSTVLDSSASFESSGSFTSTLVPFQHQHVHRGFSLGGCAERGLYWGPRDHVMNDEGSIEKDSSEVAMNKGKGSRRHWKKFLSKISIGGMSIFKKNDNTNARVSCSTSLSAETSMHGVEVDDNYLDSDVLMGCENLHWAQGRAGEDRLHIVICEDHGWVFVGIYDGFNGPDATDFLLNNLFYAVNDELQEMLCGHNKFELKDSDSLELREKVLFRGNGVVYGCCSSGDNRDNYPIENGELNLECVSEGVEGMNEINSERVDLSHSDVLQALSESLRKTEDVFMRTAEEMIGQNPVLAMMGSCVLVMLMKGQDVYLMNVGDSRAVLATHSGKSLQLTEEHSTHVKEEVYRIRREHPDDPLAVTRGRVKGRLSVTRAFGAGFLKQPKQNNAVLEAFRVSYIGESPYITCFPSLHHHKLNPNDKFLILSSDGLYQYFTNEEAAAKVESFITMFPDRDPAQLLIEEALGRAAKRAGLEFHELLDIPQGERRHYHDDISIVIISLEGKIWRSLV 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04193 597 SUPERFAMILY PP2C-like 230 589 IPR036457 -
Vimu6g04193 597 PANTHER PROTEIN PHOSPHATASE 2C 190 586 IPR015655 GO:0004722|GO:0006470
Vimu6g04193 597 CDD PP2Cc 231 588 IPR001932 -
Vimu6g04193 597 ProSiteProfiles PPM-type phosphatase domain profile. 218 588 IPR001932 -
Vimu6g04193 597 Pfam Protein phosphatase 2C 342 554 IPR001932 -
Vimu6g04193 597 SMART PP2C_4 217 586 IPR001932 -
Vimu6g04193 597 Gene3D - 192 594 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04193 Vimu-Chr6 43397564 43400535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04193 1 597 PP2C-type Phosphatase Gene Family AT1G07630 44.868 1.29e-169 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04193 - K01102 gmx:100794388 968.763