Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04188 ATGCCTCATTCTTCTTCTTCTTCTTCTCCCGTTTCAACCATTTCCAATCTCCGTATTCGCGCCCTAATACTTTGGTCCTCCAAGAACTACGCAATAGCTGCATTCGTTTTCCTCCTACTCTTCTCCCTCACTCTCTTCTCTCACTTGGATTCCCGTTCCCGTTCGCATTCCCGTTACCCCTCCCATCCACGCTCCACCCTTGTTCCCTTAACGCTCCTCCGTAACGCCAACCGAACGCGCGCGCTTTGCTTGGACGGGAGCGCCCCCGGTTACCACTTCCAAAGCGGGTTCGGATCTGGATCTCGCAATTGGTTGCTCCACATTGAGGCGCTGCATCTGTCTAGAATTTCCAGCAATATCAACGTAGATTTCTTTAACTGGAACAAGGTGAAGATTCGCTATTGTGATGGTGCATCTTTTGCTGGTCACCCGGAGAGCGAGAGCCGAAGTGAGTTATTGTTCAGAGGCCAGGTCATATGGGAAGCTACTATGGATGAACTCTTATCAATTGGCCTGTCCAAAGCAAAGCAGGTTGTACTTTCATGA 546 0.5 MPHSSSSSSPVSTISNLRIRALILWSSKNYAIAAFVFLLLFSLTLFSHLDSRSRSHSRYPSHPRSTLVPLTLLRNANRTRALCLDGSAPGYHFQSGFGSGSRNWLLHIEALHLSRISSNINVDFFNWNKVKIRYCDGASFAGHPESESRSELLFRGQVIWEATMDELLSIGLSKAKQVVLS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04188 181 Pfam Pectinacetylesterase 65 109 IPR004963 GO:0016787
Vimu6g04188 181 Pfam Pectinacetylesterase 117 181 IPR004963 GO:0016787
Vimu6g04188 181 PANTHER NOTUM-RELATED 118 181 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04188 Vimu-Chr6 43347170 43349393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04188 17 181 Carbohydrate Esterase AT3G09410 41.000 1.04e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04188 K19882 - gmx:100792819 206.068