LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g04172	ATGCTCGAAACTGTGTCCCTCGAGAACAACAACTTCAATTTCATTCCTGACCGTTGCTTCCAAGGTCTCACTAATTTAAAGAACCTCAGCATGGCATACAATTTCAACCTCACTCCATGGGTGATTCCAGCCGACTTGGCTCAGTCATCCAAACTGGTTAAACTTGACCTCAGAAGTACAAATATCATTGGTACATTGCCTGATGTGTTTGACTCCCTTATTCTGTGGCTCAATAATCAGAGGCATGAGTTCAATGACTATGATATTAAGACATATTGGCCCAATATTCCCAAACACGAGTCCGGAGGCTTATTGGGTAACATTGAGGTATGGTTACAGGGGAACTTTTTCACAGGTCTCATTCCGAATTTATCAAATTGCACCTCATTGTTTGATTTAAACCTAAATGAGAACTTGTTAACCGGTATGCTTCCATCTTCCCTCAAATCCCTTTCAAGTTTGAGGAAAGTCTCTTTAAATCATAATTTTCTCGAGGGTCCATATCCTTCTTTTAGAATGAGTGTGAAGGTCGACTTTAAAGATAATGTTTTTTGTAACCTTATCCCTGGACCCTGTGATCCTCGCGTCACTGTTTTGATTGATATTGATAAGCATTTAGGTTATCCTATCAGTTGGCAAGTGCATGGTTCGGAAAAGATTATTACTGTGAATTTCGCCCGTATGAATTTGAAAGGAACCATTTCACCTGCATTTGCCAACTTAACTCATTTGAAAAACCTTGATCTCAGTGACAATGATTTGGAGGGATCAATACCAGAAGGTTTAACTAATCTGGCTCAGCTTGAGATTTTATACGTGTCTAGTAACAATTTATCTGGTTATGTTCCAAAGTTCTCAACCAAAGTGATTTTGAGAATAAAAGAAAATCCAAACATTAAAGGTGGTGGCGGCGGAACTGCTCTGTCAAGTGATGCAGCGTCAAGCGGTTTTGCATTTGCACTCTCTTCTGCTTGGATCATAGGTATTGTTGGTATTGTTGTGTTTTTTGTTGGTGTGATCGTATTTGTCTTTTGCAAGTGTCAAGGTAAAATCCGTCACAGGAAGTCTGGGAGGGTTAATAATCCCGAAAATGGGGAAGGAGGGGTTAATATTGAAATGACGAGCGTCTTGAACGAGTTGCATAACCACGACAATGAACAAAGTGATATTCATGTTTTTGAGGATAGGAATACTACTATTTCAATTGGGGTTCTTCAACAAGCAACGGATAATTTTAATAAGAAAAACATTTTAGGTAAGGGAGGGTTTGGGGTTGTTTATAAAGGAGAATTGCATGATGGAAGGAAAATTGCCGTGAAGAAAATGAATTCTGTTGCAGTGGGGAGCAAGGGATTGAATGACTTCCAAGCTGAGATTGCAGTTCTCAGTCAAGTCAGACACAGACATTTAGTCACTCTTTTAGGACATTGCATAAACGACAATGAAAGATTTTTGGTTTATGAGTATATGTTTCAAGGAACGCTAACCCAACACCTGTTTGATTGGCGTGAAAACGGATGTGCTCCTTTGACTTGGAAACAAAGGATAGCAATTGCTTTAGACATAGCTCGGGGAGTGGAGTATCTTCACAGTTTAGCTCACCAAAGCTTCATACATAGAGACTTGAAGCCCCCAAATATATTATTGGGCGATGACTTGATAGCCAAGGTTGCAGATTTTGGTTTGGTGAAAAAGGCATCAGATGGAACATTTGTGTCAAAGTTGGCTGGAACATTGGGATATATAGCACCTGAATATGCAGTTACCGGAGAAGTTACTACCAAAGTCGATGTGTACGCATTTGGAGTAATTTTGATGGAACTGATCACAGGTAGAAAGGTATTGGACAATACAGTGTCCGACGAAAGGTCTCACCTCGTTTCCTGGTTTCGTAGGGTGCTGATTAACAAAGAGAGCATATCAAAGACGGTTGATCAAACCCTCGATCCTGACGAGGAAACGATGAAAAATATTTATCAAGTGGCTGAACTGGCAGGTCATTGCACTGCTCGGGAATCATATCAAAGGCCAGATATGGGTCATGTAGTCAATGTCTTGGTTCCTCTAGTAGAGGAATGGAAGCCTAAGAGCCACGAAGAAGAAAACTTTGATATTGACATTCATACGGTGAACCTTTCTCAACATCTGCGAAGATGGAAAGCTGACGAAGGCACTTCCACAATGTTCGAATTGTCCATCTCATAA	2205	0.4036	MLETVSLENNNFNFIPDRCFQGLTNLKNLSMAYNFNLTPWVIPADLAQSSKLVKLDLRSTNIIGTLPDVFDSLILWLNNQRHEFNDYDIKTYWPNIPKHESGGLLGNIEVWLQGNFFTGLIPNLSNCTSLFDLNLNENLLTGMLPSSLKSLSSLRKVSLNHNFLEGPYPSFRMSVKVDFKDNVFCNLIPGPCDPRVTVLIDIDKHLGYPISWQVHGSEKIITVNFARMNLKGTISPAFANLTHLKNLDLSDNDLEGSIPEGLTNLAQLEILYVSSNNLSGYVPKFSTKVILRIKENPNIKGGGGGTALSSDAASSGFAFALSSAWIIGIVGIVVFFVGVIVFVFCKCQGKIRHRKSGRVNNPENGEGGVNIEMTSVLNELHNHDNEQSDIHVFEDRNTTISIGVLQQATDNFNKKNILGKGGFGVVYKGELHDGRKIAVKKMNSVAVGSKGLNDFQAEIAVLSQVRHRHLVTLLGHCINDNERFLVYEYMFQGTLTQHLFDWRENGCAPLTWKQRIAIALDIARGVEYLHSLAHQSFIHRDLKPPNILLGDDLIAKVADFGLVKKASDGTFVSKLAGTLGYIAPEYAVTGEVTTKVDVYAFGVILMELITGRKVLDNTVSDERSHLVSWFRRVLINKESISKTVDQTLDPDEETMKNIYQVAELAGHCTARESYQRPDMGHVVNVLVPLVEEWKPKSHEEENFDIDIHTVNLSQHLRRWKADEGTSTMFELSIS	734

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g04172	734	Gene3D	Ribonuclease Inhibitor	196	302	IPR032675	-
	Vimu6g04172	734	ProSiteProfiles	Protein kinase domain profile.	412	690	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu6g04172	734	FunFam	PTI1-like tyrosine-protein kinase 3	490	700	-	-
	Vimu6g04172	734	CDD	STKc_IRAK	418	689	-	-
	Vimu6g04172	734	Gene3D	Ribonuclease Inhibitor	1	96	IPR032675	-
	Vimu6g04172	734	FunFam	Leucine-rich repeat receptor-like kinase	194	301	-	-
	Vimu6g04172	734	ProSitePatterns	Protein kinases ATP-binding region signature.	418	441	IPR017441	GO:0005524
	Vimu6g04172	734	Gene3D	Transferase(Phosphotransferase) domain 1	490	713	-	-
	Vimu6g04172	734	SUPERFAMILY	RNI-like	2	280	-	-
	Vimu6g04172	734	SUPERFAMILY	Protein kinase-like (PK-like)	386	694	IPR011009	-
	Vimu6g04172	734	Pfam	Protein kinase domain	412	683	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu6g04172	734	Gene3D	Phosphorylase Kinase; domain 1	372	489	-	-
	Vimu6g04172	734	Pfam	Leucine rich repeat	2	62	IPR001611	GO:0005515
	Vimu6g04172	734	Pfam	Leucine rich repeat	237	278	IPR001611	GO:0005515
	Vimu6g04172	734	FunFam	receptor-like protein kinase FERONIA	375	489	-	-
	Vimu6g04172	734	SMART	serkin_6	412	690	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu6g04172	734	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	537	549	IPR008271	GO:0004672\|GO:0006468
	Vimu6g04172	734	PANTHER	OSJNBA0070M12.3 PROTEIN	2	725	-	-
	Vimu6g04172	734	Gene3D	Ribonuclease Inhibitor	97	190	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g04172	Vimu-Chr6	43147255	43150205	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g04172	2	686	Receptor kinase-like Gene Family	AT5G07280	32.249	8.77e-80	275

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Vimu6g04172		Pkinase	2.5e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g04172	K00924		-	gmx:100781851	895.575