Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04165 ATGGCGGAAACCGACCCTTCCTGGGTGCTCCGCAACCTCACCCGCGTTTCCACCCAAATCTCGTACCTCTCCTCCTTCAAGCCCATCATCAGGACTCAATGCTGCGACCTCGCTCGCCGCATACGCTTCCTCGCTCCTCTCTTCCTCGAATTGCATGACAACGTCGAGTTGACTGGTGCCGTTGCACTTGTGACCACTCAGTTTAGAAGAGCTAAAGAGCAGTTTGATCCACTGTGTCTTCAGCTTTATGGACAACTTTTGTCTGTTTACAACCAGAGCTATGATGTGAACACTCAAACTGCTGAACTACGTTCAATCTGTGAAAAGCTACAATTTATCAATGTGGATGATGTCAAGCAAGAGTCACTTGCTCTAGAAAAGATGGGCGGAGAGAGGATACAGGATATGTCGTTGGTTGTGCTGAAAAAAATCCAAGATTTCTTAATGGTGGAATCAGGAAACATTATTGTGTCACCAAGTGAGGATATATCTCGACATACTGATGAGTCATATGTGAAATCATGTACGCAATCACTGGTTATACCTGATGAGTTTCGCTGTCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATATGAACGATCTTGTATAAAGAAATGGCTTGAAGCAGGGCATGGAACGTGTCCCAAGACTCAGCAGATTCTTTCCACTCCCATCCTCATACCCAACCATGCTTTATATGGCCTGATATCTAGTTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGGTTAGGGAATTTATGGCTCTGTAAGACAACATCGGATGGATCTTCTGAATTAGTAGATCTTGATATCTTAGTGAGCAAACTTTCTTCCAGAGGTATTGAGGATCGACGAAATGCTGTAGGTGAGCATTGTATGGCATACATTTCTTCTTTTCCCCTCTCTCTCTCTCTCTTCAAAATATATTGGTTATTGTGGTTTATGTGGTAG 978 0.4387 MAETDPSWVLRNLTRVSTQISYLSSFKPIIRTQCCDLARRIRFLAPLFLELHDNVELTGAVALVTTQFRRAKEQFDPLCLQLYGQLLSVYNQSYDVNTQTAELRSICEKLQFINVDDVKQESLALEKMGGERIQDMSLVVLKKIQDFLMVESGNIIVSPSEDISRHTDESYVKSCTQSLVIPDEFRCPISLELMKDPVIICTGQTYERSCIKKWLEAGHGTCPKTQQILSTPILIPNHALYGLISSWCEANGVEPPKRLGNLWLCKTTSDGSSELVDLDILVSKLSSRGIEDRRNAVGEHCMAYISSFPLSLSLFKIYWLLWFMW 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04165 325 FunFam RING-type E3 ubiquitin transferase 180 254 - -
Vimu6g04165 325 ProSiteProfiles U-box domain profile. 180 254 IPR003613 GO:0004842|GO:0016567
Vimu6g04165 325 PANTHER U BOX DOMAIN-CONTAINING 60 299 - -
Vimu6g04165 325 SUPERFAMILY RING/U-box 181 257 - -
Vimu6g04165 325 CDD RING-Ubox_PUB 182 234 IPR045210 -
Vimu6g04165 325 SMART Ubox_2 184 247 IPR003613 GO:0004842|GO:0016567
Vimu6g04165 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 254 IPR013083 -
Vimu6g04165 325 Pfam U-box domain 181 251 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04165 Vimu-Chr6 42871831 42886692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04165 48 299 U-box Gene Family AT3G46510 42.692 5.99e-58 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04165 - - gmx:121172605 414.075