Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04158 ATGGGGGGTTTCCTAGGTCTAAGTTTTAGTCACTTTAACCCTTTGGGTGTCCGTCAAATTGCCATTCTCACGCCAAGCCAACAGAATTCCCAGAAGGGTTTTCAAAGTTTCAACCTTGATAGTGGTTTTCTTCTTCTTCTTTTTTTTTTTAATTTTTTTTCTGCATACCCTTTACAAGATCTTGAATTTGTTGAAATGGAGTGTGAAGTGAAGTTACAAGAGGGAGATCTGCATGCAGAGGTGGTAACTGAACCAAACCCTGTTGGTTTTGACAACATGGAAGAAGAACACACTTTGTCGGTTGCCGAGAGAGAGATGTGGCTGAATGGTGACCAAGACGAGATTCTGGGAGTCAATGAGGCTTCTATGTTCTACGACGATTTCCCTACTCTCCCTGATTTCCCTTGCATGTCGTCATCGTCTTCTTCATCTTCAGCGCCACCGCTTCCTCTGAAGACCATGACGTGTTCCACCACAACCACAGCAACCACCACCACTTCCTCTTCTTCCTCATCCTCTTCATGGGCCGTGTTGAGGTCAGATGTTGAGGAAGATGTGGAGAAAAATCATGGCAACGGCTACATGCATGACCAGTTTGATGCAACAGCTTTGTCTTCCACCGCTTCCATGGAGATTTCCCAGCAGCAAAACCCTGATCCTGGACTTGGTGGCTCTGTTGGAGAGTGCATGGAGGATGTTGTGGACACTTTTGGGTACATGGAGCTTTTAGAGGCCAATGACTTCTTCGATCCTGCCGCAATCTTTGAGAACGAGGAGAGCGAAAACCCTTTAATAGAATTTGGCACACTTGAGGAACAGGTGTCACTGCAAGAGGGGCAACAGGAAATGATGCATCAGCGAGAGAACATTGAAGACGATCGCAAGGTTCCTGTGTGTGAAGAGATAAAAGGAGAGGAAGAAGGTGGTGACGGTGGTGGTGGCGTGGTAGATGATGAAATGAGTAATGTATTCTTGGAGTGGCTCAAGTCTAACAAGGACAGTGTTTCTGCTAATGACTTGAGGAATGTTAAGCTCAAGAAGGCAACAATTGAAAGCGCAGCAAAGCGTTTAGGGGGAGGAAAAGAAGCTATGAAACAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGCCACCTTCAGAATAAGCGGCGCAAGGACAATAGTGAAAATGCTAACGACCCTCTTCAGGCACAGATTCAGGATCCCAGTGGCCAGAACAACCAGAACACTCATACTAGTGGCTCATTTGCACCTGAATCGAACTCTTGTTTCAACAACCAGACGCCCTGGTTGAGTCCTCAAACTTTTGGGACAGATCAGGCCCCTATCATGGTTCCATCACAGCCCTATTCACAACCCATGGTGGGGTATGTGGGTGACCCTTACACCAGTGGTTCTCCTTCGAATAACATCACAGCCACTCATAACCATAACAATAATAACCCTTACCAACCAGGCACGGACCAATACCACATGTTGGAATCAGCACATTCATGGCCTCATTCTCAGTTCAATGTTCCTTCTCCTTATAGCCAGTCTTATGGGGACAACGGCCTTTTCACATCTGGGGGTTTTGGCGGCTATGGCAATAACCAGTACCCTTATCAGTTTTTTCATGGTCCTGGTGATAAGTTGATGAGGTTAGGACCCTCTGCAACTAAGGAAGCAAGGAAGAAGAGAATGGCGAGGCAGAGAAGGTTTTTATCTCATCACAGGAATCACAACGGTAATCACCACCAGAATCAAGGGTCTGACCCACATACAAGACTGGGAAGTGATAATTGCACCACTGGTTTGGTTGCACCTCATCAAGCAAATTCTGCAGCAGCCAATTGGATGTACTGGCAGGCCATGGCGGGTGGCTCGGCTGGTCCTTTGGCGCCGGTGGTTCCGACCGATCCGCTGGCCGGACAAACGGTGGTGGACCGGTCCACCATGCACACACAGAATTCTTATCAGAATCGAGCTGCATCAGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGATTCCTTCTGCAAAAGGTGTTGAAACAAAGCGATGTGGGAAGTTTGGGAAGAATAGTTTTGCCAAAAAAAGAAGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGAGATGGAATATCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGATTTTGTGAGAGCCAATGGCCTCCAAGAAGGAGATTTCATAGTCATATACTCAGATGTGAAGTGTGGAAAATATATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTGTGAAACCAGAGACGAAAAAAGCAGGAAAATCGCAGAAAAACCAGAATGGGACTAATGCATCAAATCCAGCTGGAACTGCTGCCAATAATGGCAGGTCATCGCCACCGAAACCAAAAGCTGAAAAAAAGTAG 2472 0.4644 MGGFLGLSFSHFNPLGVRQIAILTPSQQNSQKGFQSFNLDSGFLLLLFFFNFFSAYPLQDLEFVEMECEVKLQEGDLHAEVVTEPNPVGFDNMEEEHTLSVAEREMWLNGDQDEILGVNEASMFYDDFPTLPDFPCMSSSSSSSSAPPLPLKTMTCSTTTTATTTTSSSSSSSSWAVLRSDVEEDVEKNHGNGYMHDQFDATALSSTASMEISQQQNPDPGLGGSVGECMEDVVDTFGYMELLEANDFFDPAAIFENEESENPLIEFGTLEEQVSLQEGQQEMMHQRENIEDDRKVPVCEEIKGEEEGGDGGGGVVDDEMSNVFLEWLKSNKDSVSANDLRNVKLKKATIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKDNSENANDPLQAQIQDPSGQNNQNTHTSGSFAPESNSCFNNQTPWLSPQTFGTDQAPIMVPSQPYSQPMVGYVGDPYTSGSPSNNITATHNHNNNNPYQPGTDQYHMLESAHSWPHSQFNVPSPYSQSYGDNGLFTSGGFGGYGNNQYPYQFFHGPGDKLMRLGPSATKEARKKRMARQRRFLSHHRNHNGNHHQNQGSDPHTRLGSDNCTTGLVAPHQANSAAANWMYWQAMAGGSAGPLAPVVPTDPLAGQTVVDRSTMHTQNSYQNRAASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGVKPETKKAGKSQKNQNGTNASNPAGTAANNGRSSPPKPKAEKK 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04158 823 MobiDBLite consensus disorder prediction 381 438 - -
Vimu6g04158 823 Pfam B3 DNA binding domain 676 772 IPR003340 GO:0003677
Vimu6g04158 823 FunFam B3 domain-containing transcription factor FUS3 671 786 - -
Vimu6g04158 823 CDD BfiI_C_EcoRII_N_B3 673 774 - -
Vimu6g04158 823 SMART B3_2 675 777 IPR003340 GO:0003677
Vimu6g04158 823 ProSiteProfiles B3 DNA-binding domain profile. 675 777 IPR003340 GO:0003677
Vimu6g04158 823 MobiDBLite consensus disorder prediction 392 438 - -
Vimu6g04158 823 MobiDBLite consensus disorder prediction 779 823 - -
Vimu6g04158 823 MobiDBLite consensus disorder prediction 139 176 - -
Vimu6g04158 823 MobiDBLite consensus disorder prediction 580 595 - -
Vimu6g04158 823 SUPERFAMILY DNA-binding pseudobarrel domain 674 770 IPR015300 -
Vimu6g04158 823 Gene3D - 671 790 IPR015300 -
Vimu6g04158 823 MobiDBLite consensus disorder prediction 790 813 - -
Vimu6g04158 823 MobiDBLite consensus disorder prediction 571 595 - -
Vimu6g04158 823 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 325 791 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04158 Vimu-Chr6 42555457 42559273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04158 104 801 B3 DNA Binding Superfamily AT3G24650 48.391 4.02e-165 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu6g04158 B3 4.3e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04158 K09287 - gmx:100795226 1151.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04158 6 42555457 42559273 Vimu6g04158 6 42555457 42559273 ECH