Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04157 ATGCTTGTGGTTGAGTTTTTGAGGGAATTGCTAATGTCAATGCCGAGGCAAGCCTTGAGCAACCAAAACCACAACCAAATGTCGAGGCAAGCTTTCATCACAAACCATCACCATCACCTTCTTCGCCATGTTCTTCTCTTTGCATTTCTTCTTCCTCTTTCATTTGCTGCTAATGATGAAGTTACTGCATTGCTTTCCTGGATGCATAGCTCTTCCAAAACTCATTCAGCCTTTTCTAGTTGGAACCCTTTGGACTCCAATCCTTGCAGTTGGTCTTACATCAAATGCTCCTCAGCAAACCTTGTCACGGAGATAACCATTCAAAATGTTGAGCTGGCCCTTCCCTTCCCTTCGAAAATCTCATCCCTTTCTTTCCTTCAAATATTGGTCATTTCTGGGGCTAACCTCACTGGGATTATCTCACCTGACATTGGAAACTGTTCTGAGCTTAGAGTCCTTGACCTTAGCTCCAATGGTCTTGTGGGTGGCATTCCTTCGAGTGTTGGGAGGCTCAAAAACCTCCAAAACTTGAGCTTGAACTCCAACCATCTCACAGGGTCAATCCCAAGTGAGCTTGGTGATTGTGTCAATCTCAAGACCCTTGACATTTTTGATAACAGTCTTAGTGGGGATCTTCCTGTGGATTTAGGGAAGTTGTCGAATCTGGAGGTTATAAGAGCTGGAGGGAACAGTGGCATTGTGGGGAAGATTCCAGATGAGCTAGGAGATTGCAGAAATTTGACAGTGTTGGGTCTTGCCGAGACAAAAATTTCTGGTTCATTGCCTGCTTCAATAGGCAAGCTAAGTATGCTTCAGACCTTGTCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCCGAAATAGGGAACTGTTCAGAGCTTGTCAACTTATTTTTTTATGAGAATAACCTCTCTGGTTCCTTACCAAGAGAGATTGGTATGCTTCAGAAGCTGGAAAAGATGCTGCTGTGGCAAAACAATTTTGTTGGGGACATTCCTGAGGAAATTGGTAACTGCAGAAACTTGAAGATTCTTGATGTCTCTTTGAATTCTCTCTCTGGTGGAATACCCCAAAGTCTGGGGAAACTCTCAAATCTTGAAGAACTTATGTTGAGTAATAATAACATCTCTGGTTCAATACCACCAGCTTTGTCCAATCTCACAAACCTGATACAGTTGCAGTTGGATACAAATCAGCTGTCAGGTTCAATTCCACCTGGGATTGGAAGCTTGACAAAGCTAACAGTCTTTTTTGCTTGGCAGAACAAACTTGGAGGTGGCATTCCATCATCGTTGGGAGGTTGTAGAAGCCTTGAGGCCTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGCCTGTTTAAACTTCAAAATTTAACAAAGCTTCTCCTAATCTCTAATGATATTTCTGGCCCTATTCCTCCTGAGATTGGGAACTGCACTTCCCTCATTCGCCTCCGGCTTGTAGGCAACAGAATCAGTGGGGAGATACCGAGAGAAATCGGCTCTCTTAAGAGCCTTTATTTCCTTGATCTGTCTGAAAATCAGCTGACTGGGTCAGTACCATTTGAGATTGAAAACTGTAAAGAACTGCAAATGCTGAATTTAAGCAACAACTCCCTTTCTGGCGCCTTGCCTAATTATTTGTCTTCTCTCACAAGGCTAGAGGTCTTGGATGTTTCTAGGAATAACTTCTCTGGTGAGGTTCCAATAAGTATTGGTCAACTCACTTCACTTCTTAGACTCATCCTAAGTAGAAACTCTTTCTCTGGGCCAATTCCCTCCTCAATTGGGCAATGTTCAGGTCTTCAGCTGCTAGACCTTAGCAGCAACAATTTTTCAGGGAGCGTTCCACCAGAACTGCTTCAAATTGAAGCACTTGATATTTCTCTAAATCTGAGTCACAATGCATTATCTGGAGTGATCCCACCAGAGATTTCTTCTCTGAAAAAGCTGTCAGTTCTAGACCTTTCTCACAACAATCTTGAAGGTGACTTGACGGCCTTTTCAGGGCTAGAAAATCTCGTTTCTCTTAACATTTCCTACAACAAAATCACTGGTTATCTTCCAGACACAAAGTTATTCCATCAACTATCAGCAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTTGTTAGCAGTGAGGCTATGACAAAAATGCTGAATGGTACTAATTCTAAGAGGTCAGAGATAATCAAACTGGCTATTGGGCTGCTCAGTGCCTTGATTGTTGCAATGACAGTCTTTGGAGTTGTTACTGTCTTTCGAGCAAGGAAAATCATTCAAGCAGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTAAACTTCTCTGTGGAGCAAGTCTTAAAGTGTTTGGTGGAATCCAATGTAATTGGAAAGGGGTGTTCAGGGATTGTTTATCGTGCCGAAATGGAAAATGGGGATATCATTGCTGTGAAAAGACTATGGCCAACAACAATAGCTGCAAAATGTGATGATCAAAGCGACAAGTTAGCAGTTAATGGCGGGGTACGTGATTCCTTTTCAGCTGAGGTAAAAACTCTCGGTTCAATTCGCCACAAGAACATTGTAAGGTTCTTGGGTTGCTGTTGGAACAGAAAGACAAGGTTGCTTATGTATGATTACATGCCAAATGGGAGTCTAGGAAGTCTGCTTCATGAACGAAGTGGCAACTGCTTGGAATGGGACATAAGGTTTCGGATAATACTAGGAGCAGCACAAGGTGTGGCTTATTTGCACCATGATTGTGCTCCTCCTATTGTTCATAGGGACATCAAGGCGAACAACATTCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTTGCTCGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGAATATGGGTACATGATGAAAATAACAGAGAAAAGTGATGTTTATAGCTATGGCATTGTTGTGCTAGAAGTCCTGACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTCCATATTGTTGATTGGGTAAGACAGAAAAGAGGTGGAGTTGAAGTGGTGGATGAAAGCTTGAGAGCTCGGCCAGAATCCGAAATTGAGGAAATGTTGCAGACCTTAGGAGTGGCTTTGCTGTGTGTGAACTCAAGCCCAGATGACAGACCAACCATGAAAGATGTTGTAGCAATGATGAAGGAAATTAGGCAGGAAAGAGAGGAATGTGTGAAAGTTGACTTGCTTCTTCATGCATCTTCTGCAAATGATCAACAAGAAAGAAATATTTCAAATAGTCAATATAGCAATGAGGCTAGGCAACTAGGATTTTCTTAG 3405 0.425 MLVVEFLRELLMSMPRQALSNQNHNQMSRQAFITNHHHHLLRHVLLFAFLLPLSFAANDEVTALLSWMHSSSKTHSAFSSWNPLDSNPCSWSYIKCSSANLVTEITIQNVELALPFPSKISSLSFLQILVISGANLTGIISPDIGNCSELRVLDLSSNGLVGGIPSSVGRLKNLQNLSLNSNHLTGSIPSELGDCVNLKTLDIFDNSLSGDLPVDLGKLSNLEVIRAGGNSGIVGKIPDELGDCRNLTVLGLAETKISGSLPASIGKLSMLQTLSIYSTMLSGEIPPEIGNCSELVNLFFYENNLSGSLPREIGMLQKLEKMLLWQNNFVGDIPEEIGNCRNLKILDVSLNSLSGGIPQSLGKLSNLEELMLSNNNISGSIPPALSNLTNLIQLQLDTNQLSGSIPPGIGSLTKLTVFFAWQNKLGGGIPSSLGGCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPPEIGNCTSLIRLRLVGNRISGEIPREIGSLKSLYFLDLSENQLTGSVPFEIENCKELQMLNLSNNSLSGALPNYLSSLTRLEVLDVSRNNFSGEVPISIGQLTSLLRLILSRNSFSGPIPSSIGQCSGLQLLDLSSNNFSGSVPPELLQIEALDISLNLSHNALSGVIPPEISSLKKLSVLDLSHNNLEGDLTAFSGLENLVSLNISYNKITGYLPDTKLFHQLSATDLAGNQGLCPNGHDSCFVSSEAMTKMLNGTNSKRSEIIKLAIGLLSALIVAMTVFGVVTVFRARKIIQADNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRAEMENGDIIAVKRLWPTTIAAKCDDQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRKTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVVDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDLLLHASSANDQQERNISNSQYSNEARQLGFS 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04157 1134 PRINTS Leucine-rich repeat signature 511 524 - -
Vimu6g04157 1134 PRINTS Leucine-rich repeat signature 653 666 - -
Vimu6g04157 1134 Gene3D Phosphorylase Kinase; domain 1 790 896 - -
Vimu6g04157 1134 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 789 896 - -
Vimu6g04157 1134 Pfam Protein tyrosine and serine/threonine kinase 809 1087 IPR001245 GO:0004672|GO:0006468
Vimu6g04157 1134 MobiDBLite consensus disorder prediction 1113 1134 - -
Vimu6g04157 1134 Pfam Leucine rich repeat N-terminal domain 57 97 IPR013210 -
Vimu6g04157 1134 ProSiteProfiles Leucine-rich repeat profile. 655 677 IPR001611 GO:0005515
Vimu6g04157 1134 FunFam Predicted protein 214 311 - -
Vimu6g04157 1134 Gene3D Ribonuclease Inhibitor 635 721 IPR032675 -
Vimu6g04157 1134 Gene3D Ribonuclease Inhibitor 550 634 IPR032675 -
Vimu6g04157 1134 ProSitePatterns Protein kinases ATP-binding region signature. 812 844 IPR017441 GO:0005524
Vimu6g04157 1134 Gene3D Ribonuclease Inhibitor 56 231 IPR032675 -
Vimu6g04157 1134 SMART LRR_typ_2 436 460 IPR003591 -
Vimu6g04157 1134 SMART LRR_typ_2 364 387 IPR003591 -
Vimu6g04157 1134 SMART LRR_typ_2 171 195 IPR003591 -
Vimu6g04157 1134 SMART LRR_typ_2 316 340 IPR003591 -
Vimu6g04157 1134 SMART LRR_typ_2 508 532 IPR003591 -
Vimu6g04157 1134 SMART LRR_typ_2 388 412 IPR003591 -
Vimu6g04157 1134 SMART LRR_typ_2 653 675 IPR003591 -
Vimu6g04157 1134 SMART LRR_typ_2 580 604 IPR003591 -
Vimu6g04157 1134 SMART LRR_typ_2 676 701 IPR003591 -
Vimu6g04157 1134 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 57 213 - -
Vimu6g04157 1134 SMART serkin_6 806 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04157 1134 ProSiteProfiles Leucine-rich repeat profile. 366 389 IPR001611 GO:0005515
Vimu6g04157 1134 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 737 1104 - -
Vimu6g04157 1134 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 312 420 - -
Vimu6g04157 1134 SUPERFAMILY RNI-like 131 505 - -
Vimu6g04157 1134 Pfam Leucine Rich Repeat 535 556 IPR001611 GO:0005515
Vimu6g04157 1134 SUPERFAMILY L domain-like 429 742 - -
Vimu6g04157 1134 Gene3D Transferase(Phosphotransferase) domain 1 897 1112 - -
Vimu6g04157 1134 SMART LRR_sd22_2 412 444 - -
Vimu6g04157 1134 SMART LRR_sd22_2 147 179 - -
Vimu6g04157 1134 SMART LRR_sd22_2 364 390 - -
Vimu6g04157 1134 SMART LRR_sd22_2 195 224 - -
Vimu6g04157 1134 SMART LRR_sd22_2 653 678 - -
Vimu6g04157 1134 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 897 1107 - -
Vimu6g04157 1134 Gene3D Ribonuclease Inhibitor 357 452 IPR032675 -
Vimu6g04157 1134 Gene3D Ribonuclease Inhibitor 453 549 IPR032675 -
Vimu6g04157 1134 Gene3D Ribonuclease Inhibitor 252 356 IPR032675 -
Vimu6g04157 1134 SUPERFAMILY Protein kinase-like (PK-like) 789 1089 IPR011009 -
Vimu6g04157 1134 Pfam Leucine rich repeat 149 208 IPR001611 GO:0005515
Vimu6g04157 1134 Pfam Leucine rich repeat 341 401 IPR001611 GO:0005515
Vimu6g04157 1134 Pfam Leucine Rich repeat 436 451 IPR001611 GO:0005515
Vimu6g04157 1134 ProSiteProfiles Protein kinase domain profile. 806 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04157 1134 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 438 725 - -
Vimu6g04157 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 941 953 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04157 Vimu-Chr6 42521992 42526656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04157 55 1094 Receptor kinase-like Gene Family AT5G56040 48.864 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g04157 PK_Tyr_Ser-Thr 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04157 - - gmx:100815339 1941.39