Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04154 ATGAAAAAACCTAAAGCCGGAAAACCAGTACTGAACTGGGCCAGACGACACAAGATTGCCTTAGGCATAGCGAGAGGTCTAGCCTATCTTCACACAGGACTAGAAGTTCCTATCACTCATGCAAATGTAAGGTCGAAGAATGTGCTTGTGGATGACTTCTTTGCAGCAAGGCTAACTGATTTTGGCCTGGACAAGCTGATGATTCCTTCCATAGCAGACGAAATGGTGGCGCAGGCCAAGACTGACGGCTACAAGGCGCCGGAGCTTCAAAGAATGAAGAAATGCAGCTCGAGGACGGATGTCTATGCTTTTGGCATACTACTGCTTGAAATCTTGATTGGGAAGAAGCCTGGGAAGAATGGAAGAAGTGGTGAGTATGTGGACTTGCCCTCAATGGTGAAGGTGGCAGTTTTGGAGGAGACAACAATGGAAGTGTTTGATGTGGAACTGTTGAAAGGGATAAGAAGTCCTATGGAAGATGGGTTGGTGCAGGCCTTGAAGCTGGCAATGGGGTGCTGTGCACCTGTGGCATCTGTGAGGCCAAGTATGGATGAAGTTGTGAGGCAGTTGGAAGAGAATAGACCAAGGAACAGGTCTGCATTATACAGCCCTACAGAAACAAGAAGTGGCAGTGTTACACCATTTTGA 648 0.4753 MKKPKAGKPVLNWARRHKIALGIARGLAYLHTGLEVPITHANVRSKNVLVDDFFAARLTDFGLDKLMIPSIADEMVAQAKTDGYKAPELQRMKKCSSRTDVYAFGILLLEILIGKKPGKNGRSGEYVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMDEVVRQLEENRPRNRSALYSPTETRSGSVTPF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04154 215 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 9 193 - -
Vimu6g04154 215 SMART tyrkin_6 1 190 IPR020635 GO:0004713|GO:0006468
Vimu6g04154 215 Gene3D Transferase(Phosphotransferase) domain 1 2 208 - -
Vimu6g04154 215 MobiDBLite consensus disorder prediction 196 215 - -
Vimu6g04154 215 MobiDBLite consensus disorder prediction 194 215 - -
Vimu6g04154 215 Pfam Protein kinase domain 16 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04154 215 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04154 215 SUPERFAMILY Protein kinase-like (PK-like) 8 191 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04154 Vimu-Chr6 42447638 42448386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04154 1 215 Receptor kinase-like Gene Family AT3G24660 79.167 8.11e-124 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu6g04154 Pkinase 2.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04154 - - gmx:100814814 406.757