Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04148 ATGACTCAAAACAGGAGCATCCGCAATTCGACGGCTCGAAGGAATCTGAATTTCTTCTCATGCGGGACGGGGAACCCAATCGATGACTGCTGGCGGTGCGACAGGCGGTGGTACCTCCGGCGAAAGAAGCTCGCCAACTGCGGCATCGGCTTCGGCCGCAACGCGATCGGCGGGCGCGATGGCCGCTACTACGTGGTGACGAACCCGAACGACGACGACCCCGTGAACCCGAAACCGGGAACGCTCCGGCACGCCGTGATTCAGGACCGACCCCTGTGGATCGTGTTCAAGAGGGACATGGTGATCACGCTGAAGCAGGAGCTGATAATGAACAGCTTCAAGACCATCGACGGGCGCGGCGTCAACGTCCACATCGCCTACGGCGCGTGCATAACCATCCAGTTTATCACCAACGTCATCATCCACGGCGTCCACATTCACGACTGCAAGCCAACGGGCAACGCCATGGTTCGCAGCTCCCCCTCCCACTACGGATGGAGAACGCTCGCTGACGGGGATGGCATCTCCATCTTTGGTTCAAGCCACATTTGGATCGACCATAACTCCCTCTCCAGTTGCTCTGATGGACTCGTCGACGCCATTATGGGCTCCACTGCCATTACCATCTCCAACAACTACTTCACCCACCACAACGAGGTCATGCTTCTGGGTCACAGTGACTCTTATGTCCGCGACAAGCAGATGCAAGTGACCATTGCTTACAACCATTTTGGGGAGGGACTTATCCAAAGAATGCCCAGACACGGGTATTTCCACGTGGTTAACAATGATTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTGATCCCACAATTAACAGCCAAGGCAACAGATACCTTGCTCCTGTGAACCCTTTTGCCAAAGAGGTAACAAAGAGAGTAGACACCGGTGCATCCGTATGGAAAAGTTGGAATTGGAGGTCTGAAGGAGACCTTTTGCTGAATGGAGCCTATTTCACCTCTTCGGGAGCAGGAGCTGCAGCGAGCTATGCTAGAGCTTCAAGTTTGGGGGCCAAGTCATCTTCTTTGGTTGGTAGCCTTACCTCTGGAGCTGGTGTTCTAAACTGTCGCAGGGGTAACATGTGTTAA 1116 0.5421 MTQNRSIRNSTARRNLNFFSCGTGNPIDDCWRCDRRWYLRRKKLANCGIGFGRNAIGGRDGRYYVVTNPNDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWIDHNSLSSCSDGLVDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPVNPFAKEVTKRVDTGASVWKSWNWRSEGDLLLNGAYFTSSGAGAAASYARASSLGAKSSSLVGSLTSGAGVLNCRRGNMC 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04148 371 Gene3D - 24 364 IPR012334 -
Vimu6g04148 371 FunFam Pectate lyase 24 364 - -
Vimu6g04148 371 PANTHER PECTATE LYASE 18-RELATED 10 369 IPR045032 GO:0030570
Vimu6g04148 371 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Vimu6g04148 371 PRINTS Pollen allergen Amb family signature 171 192 IPR018082 -
Vimu6g04148 371 PRINTS Pollen allergen Amb family signature 342 365 IPR018082 -
Vimu6g04148 371 PRINTS Pollen allergen Amb family signature 249 268 IPR018082 -
Vimu6g04148 371 PRINTS Pollen allergen Amb family signature 107 123 IPR018082 -
Vimu6g04148 371 PRINTS Pollen allergen Amb family signature 71 96 IPR018082 -
Vimu6g04148 371 PRINTS Pollen allergen Amb family signature 313 337 IPR018082 -
Vimu6g04148 371 PRINTS Pollen allergen Amb family signature 47 64 IPR018082 -
Vimu6g04148 371 SMART amb_all 99 294 IPR002022 -
Vimu6g04148 371 Pfam Pectate lyase 108 286 IPR002022 -
Vimu6g04148 371 SUPERFAMILY Pectin lyase-like 6 366 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04148 Vimu-Chr6 42329056 42331024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04148 6 371 Polysaccharide Lyase AT4G13710 82.337 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04148 K01728 - gmx:100790659 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04148 6 42329056 42331024 Vimu6g04148 6 42329056 42331024 ECH