Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04145 ATGTTACACTGTTTTACCATTTGTTCTTATTATTCCTTCCAGTTGCTGTGGGTTTCAGTTATAGAGATGGAAGAGGTGCGGAAGGTAACTAATGATGGAGAAAGCCAAAGAGAAGATGCATCCAGGGTTTTTCCCTGCCTATTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCTCTGGGAGGACACCAAAATGCTCACAAGAAAGAAAGAACAGCTGCAAGGAAGGCCAAGAGGGTTTCTATGTACTCAAGTGTTTGCTTCCCTTCCCCACTGCCAGCCCCCATGATTTTTGCTCCAACCCATCTAGACATTTTAAATACTTCCATGATCATCAATGCCCATGCAGCAGAACTCTCTTATCTCCAAAACTATCAAATTTCCAAACAATTTGGATCAAATGGTGCACCTAGATTTGGCAACACACTGTTCTATGGGGGAACTAAAAGGTTACATGGTGAAGGGAAGAACTACAATGTCAGCAAGAACTACAATGTCAGCTGGGGGGACACATCTCAATCCAAATTATTTATAAGTAACGATCAACATCTTGGAATTTGGAATGACAGTACCGAGAAGGAACAAATGCTTGATTTATCTCTCCATTTGTAG 609 0.4105 MLHCFTICSYYSFQLLWVSVIEMEEVRKVTNDGESQREDASRVFPCLFCSRKFYSSQALGGHQNAHKKERTAARKAKRVSMYSSVCFPSPLPAPMIFAPTHLDILNTSMIINAHAAELSYLQNYQISKQFGSNGAPRFGNTLFYGGTKRLHGEGKNYNVSKNYNVSWGDTSQSKLFISNDQHLGIWNDSTEKEQMLDLSLHL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04145 202 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vimu6g04145 202 Gene3D Classic Zinc Finger 23 86 - -
Vimu6g04145 202 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 26 202 IPR044246 GO:0009788
Vimu6g04145 202 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vimu6g04145 202 SUPERFAMILY beta-beta-alpha zinc fingers 42 71 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04145 Vimu-Chr6 42249621 42250229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04145 21 202 C2H2 Transcription Factor Family AT5G48890 37.433 6.54e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04145 - - vra:106759055 370.163