Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04141 TTAGTTACGAGAGAAGATGAGAAAAGGGCACTATATAAGACAGGAAGCATGTTAGGTACCAATATTGTTAAGGATCCTAGCATGTTTCCTCAACATGCCCAACAAGATCTATCTGGTAGTGTTTCAAATACAGGGCATCATGAGCAAAATAATATCACTATGCAGGCAGGGGAAGAATTTTACGTGAATGTTGGTCGTGATGGAATTGCTGCTGGAAGGGTTCTTGTTTCACCAGATATACCACGAAAGCATGAGACCGTGTTTGGTTTGAATAGAGAGAATGGCAATGTGAGATATGAAGATCTTACTAATATTTTGGGGCTGAGGAGAATGAACTCTGAGAATTCTTCTGATATATCTGACTTTTTATCTTTAAAACAGTCAGTACAGGAGATGGAAAATGGAGCTTCTGTAAACATTTCAAACAAAATTCAAAAGGGTGATGGTATGTTGAGGAAGACTGTTCAAGAACCAGCGGGTGACCAGTCTGGTCTCTCAGTTGTATCACCACTTTGTAGATATGAGGCTTCTCAGTCCAATGGATTTTCTGGTTCAGGAGTCGTAGATGATTTTCTGTCTGGGAAAATGAAGTTTCTGTGCAGTTTTGGTGGAAAAATATTACCAAGACCCAGTGATGGGAAACTCAGATATGTAGGGGGAGAGACCCACATCATATCTATCCAAAAGGATATGGCGTGGCAAGAGCTTATGAAGAAGACCTTGGGTATTTGCAATCAACCTCACACAATAAAGTACCAGCTTCCAGGAGAGGATCTTGATGCTCTAATATCTGTTTCCTCTGATGAAGATCTCCAAAATATGAAAGAGGAATACCATGGGCTTGAAAGGCATGAACGTTCTCAAAAACTTAGAATTTTTTTAGTTCCTTTGGGTGAATCCGAAGAGACATCATCAACAGAGGTGAATGCTGTTCAACAGAGTGATCCTGATTACCAATATGTTGTTGCTGTAAATGGTATGGGAGACTCTACTAGAATGAACATCGGTGGGCAAAATTTGACAAATGCATCCAGTCAGTTGGGGGCAGATTTGAACTTTATTCCAGTTCTCCCAAAATCTCCAAATGCTTCTTCTTTGGAGATCAGGGATGGTACTAATGCTTTAAATCCAGATGGGCTTTTTAATGATTCCCTGAATTTGCAAAGACCCTTGTCAATTCCTCTCGCTCCAATTCCGGTAGCAGGTTCTAACACAGGTTATATACAATTACTGGGTGACCACTCATGTCAGGGAAGCATTGAGAGCAATGCATCATATGCTCAGCTACATCCTGAGTGCTCTAATCTAAGCACTGATGGTTGCATATATCCTCAGCACGTGAGTGATACTTGTCCTTATCAGCATGGTGATGTTGGTCAGCCCAAGAAGCTCAATGGAGGTCATTTGGACTACAGTCCTAGCAAGGAATTAGTGACTCCTGTATATGTTAATCCCAGAGATGAATTTTTTGGTGGGAGGTCCTTGCAAAGGGAAAGGGTCTTCTCTAAAACTCCTCGTTCATTGTTGGATGATGCAATTTGTCGACAGGGTGAATCTTATGGAATTACAGACTCCCCTCATAGGATGCCCCATGCCTTTTCTGATCCACAGTTGCTACAAAGTGGAGCAAAGTCTGGTTACTGCTCCCAAAATGGAAATGATCAATCTTTCTCCCTGAACCTTGAAAAGGGTCAAATATCTTCATTGTTAATCCCTAGTGACTCACGTGTGAAGGTCACAGACCATCAACATGATTCTTTTGTCCATCATCCTCAAATACAAAGTAGGACACCAGAAGGGGAGTTAGCTCAGGCACCCAAAAGGCAAGATTTGACATCTTCTCCATACTATGAATCCATGGGAATGAATAATCTTGTTCACATGGATAACACATTAGCTAAAAAAAACAACTCATTTGCTCAAACTGACTGGGGTATACCCAGCTACGATGCAAAGGATGTTCAGGAAAATTCTGTGAATTTAGAAAGGATGAAGATAGTTGAACAAAATAATTTTATTCCTAAGGATAGCAAGGTTCAGCAGGGGAAATCAACTGCCATTGACAAGGGATTTGTGACTGAGTTGCATCTCTTGAACTCCTTCCCTGCTAATAACTTAAATGCTAATATTAATATGCAAAAGAATTGGGATCTAACTTTTGAGGGTATTGTCCCTATTCCATCAGACACGATGGCTCTCTCCTTAAATAATTTTGTGGAAAAGACCACATGTGATTCTAACATGAGCCAAAGGACTAGTGAGCACAAAATCAACGCTTTGGCTAAAGGTCTGAATGGTGAACAAGGGTTTGATTTTTCATTGACCAGAAATTTTGAATTAAATGCTCCAATTTTAAATTCTGAAGTAGGTTCCGGTGATAAAAGTTCCAGAGGAGGTTATACTAATAAGTTGTCCATTCATCCAGCTTCTCATAAAGCTGCACAAATCCATCCTTCGAAGAATCAGATGGCTATAGCTTTTGAAGAAAATCCTACAGCATGCTATGGAAGTTTGTATCCTGCTGCATTTTGTGATGATCTTGGTCCAAGTGTAAACATGCCTATGAATGGCCCTGATAATTCAGGCACTATTATGTCACTTAAAAAGGCACCACCTTTCCTTGATGACTTCATTACCAGCACTGATCAAGTGGTGGATCAGTTTATCCCCAAACAGTCTGCCTCTGGAATGTCAAATGTTGAAGATAAAGTTTCAGAACAACAAAAAATTTTAGAAGGCTACACTGATGTGAATCAAGTGGACACGTTCAATCTAGTAGACATGGCTCGTGTTGTTCATCCTTATATTTCTAGTGATATTGGAAGTGTTGTATCCCTATCTCATACAGAAGCTGGGAGCATCATCCCTGGGATTGAGCCTGAGGATTTTAATGAAGACAAAAATGAATTCTTTTCTGATGCAATGATAGCAGAAATGGAGGCTAGCATTTATGGTTTACAGGTTGACCATCACTGA 2976 0.4019 LVTREDEKRALYKTGSMLGTNIVKDPSMFPQHAQQDLSGSVSNTGHHEQNNITMQAGEEFYVNVGRDGIAAGRVLVSPDIPRKHETVFGLNRENGNVRYEDLTNILGLRRMNSENSSDISDFLSLKQSVQEMENGASVNISNKIQKGDGMLRKTVQEPAGDQSGLSVVSPLCRYEASQSNGFSGSGVVDDFLSGKMKFLCSFGGKILPRPSDGKLRYVGGETHIISIQKDMAWQELMKKTLGICNQPHTIKYQLPGEDLDALISVSSDEDLQNMKEEYHGLERHERSQKLRIFLVPLGESEETSSTEVNAVQQSDPDYQYVVAVNGMGDSTRMNIGGQNLTNASSQLGADLNFIPVLPKSPNASSLEIRDGTNALNPDGLFNDSLNLQRPLSIPLAPIPVAGSNTGYIQLLGDHSCQGSIESNASYAQLHPECSNLSTDGCIYPQHVSDTCPYQHGDVGQPKKLNGGHLDYSPSKELVTPVYVNPRDEFFGGRSLQRERVFSKTPRSLLDDAICRQGESYGITDSPHRMPHAFSDPQLLQSGAKSGYCSQNGNDQSFSLNLEKGQISSLLIPSDSRVKVTDHQHDSFVHHPQIQSRTPEGELAQAPKRQDLTSSPYYESMGMNNLVHMDNTLAKKNNSFAQTDWGIPSYDAKDVQENSVNLERMKIVEQNNFIPKDSKVQQGKSTAIDKGFVTELHLLNSFPANNLNANINMQKNWDLTFEGIVPIPSDTMALSLNNFVEKTTCDSNMSQRTSEHKINALAKGLNGEQGFDFSLTRNFELNAPILNSEVGSGDKSSRGGYTNKLSIHPASHKAAQIHPSKNQMAIAFEENPTACYGSLYPAAFCDDLGPSVNMPMNGPDNSGTIMSLKKAPPFLDDFITSTDQVVDQFIPKQSASGMSNVEDKVSEQQKILEGYTDVNQVDTFNLVDMARVVHPYISSDIGSVVSLSHTEAGSIIPGIEPEDFNEDKNEFFSDAMIAEMEASIYGLQVDHH 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04141 991 PANTHER OS05G0427100 PROTEIN-RELATED 177 605 - -
Vimu6g04141 991 Pfam PB1 domain 212 296 IPR000270 GO:0005515
Vimu6g04141 991 Gene3D - 214 296 - -
Vimu6g04141 991 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 215 297 - -
Vimu6g04141 991 MobiDBLite consensus disorder prediction 587 615 - -
Vimu6g04141 991 SUPERFAMILY CAD & PB1 domains 211 301 - -
Vimu6g04141 991 SMART PB1_new 210 297 IPR000270 GO:0005515
Vimu6g04141 991 CDD PB1_UP2 199 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04141 Vimu-Chr6 42216809 42219858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04141 50 327 MAP Kinase Kinase Kinase AT1G79570 42.857 5.71e-51 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04141 - - pvu:PHAVU_008G122700g 1507.27