Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04139 TTGCAGAGTTGGGGTTGGTGGTGTGTGGAGGAGGAGGAGAAAGAAGATGGAGGGATGATAATAAGGAATGCTGATCTTGAAGAACTTACAGAGTTGGGTTCTGGTACTTATGGCACTGTTTATCATGGAAAATGGCGGGGAACAGATATTGCTATAAAGAGAATTAAAAAGAGTTGCTTTGTTGGAAGGTCTTCTGAGCAAGAACGGTTGGCAAAAGATTTTTGGAGAGAAGCACAAATCCTTTCAAATCTTCATCATCCGAATGTGGTTGCATTTTATGGAATAGTACCGGATGGGGCGGAAGGAACCTTAGCAACTGTAACAGAATACATGGTTAATGGTTCCCTTAGGCATGTCCTTGTAAAGAACAATAGATCACTTGATCGTCGTAAAAAGCTAATAATTGCCATGGATGCTGCTTTTGGTATGGAATATTTGCACTCAAAAAATATTGTCCATTTTGATTTGAAATGTGACAATTTGCTTGTGAATCTAAGGGATCCACAACGACCAATATGCAAGGTTGGTGATTTTGGATTATCAAGAATTAAACGCAATACCCTTGTATCTGGAGGTGTGCGAGGAACCCTTCCATGGATGGCACCGGAGCTGTTGAATGGGAATAGCAGTCGTGTTTCTGAAAAGGTTGACGTTTTCTCATTTGGCATCTCAATGTGGGAGTTATTAACAGGAGAGGAACCTTATGCAGATATGCATTGTGGCGCCATTATTGGTGATGGTGGCATTGATAATGCTTATGGTGGTTCCGGCAATGGTAATGGCAGTGGAGTCACCATAGCAATGGTGGTGGATAGAGGAGAACATCGCCACTTCGAAAGTGGTGGAGGAAAGGAGAAAGCTTTCACCAGTGGTGGACGAATCGCCAAAAAACGGAGAGAGAAGATACACAAACCGGAGAGTATGCAAGGATATGGTGTACGAAATGAGTCCTTAAGGATGCAGAAGAATATGAACAAGTTTGTAAGTTTGATTATTCGGTTACATGTTGATTTAGGGGGTATTGTAAAGAACACTCTGAGACCTCCTGTGCCTGAACGGTGTGATTCTGAATGGAGGAAGCTTATGGAAGAGTGTTGGTCACCTGACCCTGAAAGCCGGCCATCATTCACAGAGATAACCAGCAGGTTAAGATCCATGTCTCTAGTCCTTCAAACAAAAGGGTTAAGACCCTTCTGA 1197 0.4269 MQSWGWWCVEEEEKEDGGMIIRNADLEELTELGSGTYGTVYHGKWRGTDIAIKRIKKSCFVGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGAEGTLATVTEYMVNGSLRHVLVKNNRSLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGDGGIDNAYGGSGNGNGSGVTIAMVVDRGEHRHFESGGGKEKAFTSGGRIAKKRREKIHKPESMQGYGVRNESLRMQKNMNKFVSLIIRLHVDLGGIVKNTLRPPVPERCDSEWRKLMEECWSPDPESRPSFTEITSRLRSMSLVLQTKGLRPF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04139 398 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 19 113 - -
Vimu6g04139 398 CDD STKc_MAP3K-like 32 383 - -
Vimu6g04139 398 SMART serkin_6 26 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04139 398 ProSiteProfiles Protein kinase domain profile. 26 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04139 398 SUPERFAMILY Protein kinase-like (PK-like) 22 386 IPR011009 -
Vimu6g04139 398 Pfam Protein tyrosine and serine/threonine kinase 342 383 IPR001245 GO:0004672|GO:0006468
Vimu6g04139 398 Pfam Protein tyrosine and serine/threonine kinase 28 239 IPR001245 GO:0004672|GO:0006468
Vimu6g04139 398 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524
Vimu6g04139 398 Gene3D Transferase(Phosphotransferase) domain 1 318 394 - -
Vimu6g04139 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vimu6g04139 398 PANTHER SERINE-THREONINE PROTEIN KINASE 22 385 - -
Vimu6g04139 398 Gene3D Transferase(Phosphotransferase) domain 1 9 246 - -
Vimu6g04139 398 PIRSF ILK 8 247 - -
Vimu6g04139 398 PIRSF ILK 338 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04139 Vimu-Chr6 42191911 42214256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04139 338 397 MAP Kinase Kinase Kinase AT1G16270 60.000 1.22e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vimu6g04139 PK_Tyr_Ser-Thr 5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04139 - - pvu:PHAVU_008G122700g 447.203