Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04123 GCATATTTGCAATTCAAAGATGTACCAAATATCATTGTTCTTGATTATAACCCCTTCACCACAACCAAAAACACTGATCCGTCAAAGAAGATGGGCAAAACATCACGAATATTGCTGGAAAATCGTCTGCATGCAAGTTCGACTCTTAAGTATCTGTATCTTCACAATACCATGACAAGTATTCCATTTCACATGAGAGCTTGGATCTACTCTGAATATGGGAACATAGAAGAGGTTCTCAAGTTTGATCCTAATGTGCCCACACCACACCTCATGGAAAACCAAGTGCTCATCAAAGTTGTGGCTGCAGCCATTAATCCAGTAGATTATAAGAGAGCTCTTGGTCATTTCAAGGATATTGACTCTCCTTTACCAACTGCACCAGGGTACGATGTTGCTGGGGTGGTGGTGAAAGTGGGAAATCAAGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGACATCAATGAGATTACTCTGGACCATCCAAAGACTATTGGCACTTTAGCTGAATATACTGCAGCTGAAGAGAAAGTATTGGCTCACAAACCCTCCAATTTGAGCTTTGTTGAAGCTGCAAGCCTCCCTTTGGCAATCATAACTGCTTATCAAGGACTTGAAACTGCTCAGTTCTCTGCTGGCAAATCTATACTTGTTCTGGGAGGAGCTGGTGGAGTTGGATCCCTTGTTATTCAGATCGCCAAGCATATATTTGGTGCATCTAAGATAGCAGCTACTGGTAGTACTGGAAAACTGGAATTGTTGAGAAACTTGGGAGCAGACTTGCCTATAGACTACACAAAAGAGAACTTTGAAGAACTTGCAGGGAAGTTTGATGTGGTGTACGATGCAGTAGGGCAAAGTAAAAGAGCATTGAAGGGTGTTAAAGAAGGTGGTAAAGTTGTGACAATAGTAGCACCTGCAACTCCACCAGCTATCCCTTTCTTGCTGACTTCTGATGGTGATTTGCTGGAGAAATTGAGACCTTACTTGGAGAGTGGAAAGGTGAAGCCAATATTGGATCCTAAGAGTCCCTTTCCATTTTCTCAGACAGTGGAAGCATTTTCATATTTGAAGACTAACAGAGCTACTGGAAAGTGGTCATATATCCCATTCCATAATATGCATGCATGCATGCCAAATTTCTCTCTGGCCTTATCACTCTTCTACTTTGCCTATTTACTATTTCATATAATAATGTCTTTTGCTTAA 1215 0.4099 AYLQFKDVPNIIVLDYNPFTTTKNTDPSKKMGKTSRILLENRLHASSTLKYLYLHNTMTSIPFHMRAWIYSEYGNIEEVLKFDPNVPTPHLMENQVLIKVVAAAINPVDYKRALGHFKDIDSPLPTAPGYDVAGVVVKVGNQVKKFKVGDEVYGDINEITLDHPKTIGTLAEYTAAEEKVLAHKPSNLSFVEAASLPLAIITAYQGLETAQFSAGKSILVLGGAGGVGSLVIQIAKHIFGASKIAATGSTGKLELLRNLGADLPIDYTKENFEELAGKFDVVYDAVGQSKRALKGVKEGGKVVTIVAPATPPAIPFLLTSDGDLLEKLRPYLESGKVKPILDPKSPFPFSQTVEAFSYLKTNRATGKWSYIPFHNMHACMPNFSLALSLFYFAYLLFHIIMSFA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04123 404 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 188 314 IPR036291 -
Vimu6g04123 404 Pfam Zinc-binding dehydrogenase 259 367 - -
Vimu6g04123 404 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 215 236 IPR002364 GO:0008270|GO:0016491
Vimu6g04123 404 Gene3D - 207 321 - -
Vimu6g04123 404 SMART PKS_ER_names_mod 74 367 IPR020843 GO:0016491
Vimu6g04123 404 Gene3D - 72 367 - -
Vimu6g04123 404 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 57 369 IPR044626 GO:0016628
Vimu6g04123 404 Pfam Alcohol dehydrogenase GroES-like domain 94 155 IPR013154 -
Vimu6g04123 404 SUPERFAMILY GroES-like 61 220 IPR011032 -
Vimu6g04123 404 CDD MDR_like_2 65 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04123 Vimu-Chr6 42011677 42013541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04123 93 315 Monolignol Biosynthesis Gene Families AT4G37980 25.692 4.56e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04123 K18980 - gmx:100791274 486.878