Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04111 ATGAGTTGCTTTTCATGTTTTTCATCAACTAAAGCAGCCAAACCTTGTAATAATGGAAAGAGGATGCAACAGCCTGCTTCTCATTCTCCCAAAGAATCAGCTCAGTCACAACCAGAACCTAAAATAGACAAGGAGGTCAAAAAAGATAATGAGAACAACAACATTGCTGCTCAAACTTTCACCTTCAGGGAATTGGCTAACATCACAAAGAACTTCAGGCAAGAATGCCTAATAGGAGAAGGTGGTTTTGGGAGGGTTTACAAAGGAAAACTTGAAAAAACCAACAAGGAAGTAGCTGTGAAGCAACTTGACAGAAATGGATTACAAGGGAACAGAGAATTTCTTGTTGAAGTTTTAATGTTGAGTCTTTTGCACCATAAAAATCTAGTGAATCTAATTGGATATTGTGCTGATGGAGATCAAAGATTATTGGTCTATGAGTACATGCCATTGGGATCACTTGAGGACCATCTTCTTGATCTTGAACCACGACAAAAGCCTCTAGAATGGTTTCATAGAATGAAAATAGCTTTGGATGCTGCAAAAGGTCTAGAATATTTGCATGACAAAGCCAACCCTCCAGTGATCTACCGTGACTTGAAATCATCAAACATCTTATTGGACAGAGAATTCAATGCAAAACTGTCTGATTTTGGACTTGCAAAGTTGGGTCCTACGGGAGACAAATCTCATGTATCATCAAGAGTAATGGGTACTTACGGATACTGTGCTCCTGAGTATCAAAGAACTGGTCAACTAACTGTACAATCAGATGTATACAGCTTTGGAGTTGTTTTGCTTGAACTGATCACCGGAAGGAGAGCCATTGATAACACAAGAAAACCAAATGAGCAAAATCTCGTTAATTGGGCAGAACCAATATTCAAGGAGCCAAACAGATACTCAGAATTGGCAGACCCAGTTCTCGAAGGAAAGTTTCCAGTGAGATCTTTGAATCAAGCAGTGGCAATAGCAGCCATGTGTTTGAATGAGGAGCCATCAGTGAGACCTTTGATCAGTGATGTTGTGACTGCCCTTAGTTTTCTTGGGACAATCCCAAAGGGTGAAGAAGAACAGCTAGGAACATCTCCTGTTGACATGCCCTCCCCATCACACCACCCACAACAACCCACCAATGCTTCTTCCAATCTTCTTGATCAAGATATCGCTGCCATGGAACGCCAAAGAGCAGTTGCTGAAGCCATCGAATGGGGCAACAATTCTAGGAACAAAGCACCGCACCGTCAAACTCCTCCATCTTTGTAA 1266 0.4139 MSCFSCFSSTKAAKPCNNGKRMQQPASHSPKESAQSQPEPKIDKEVKKDNENNNIAAQTFTFRELANITKNFRQECLIGEGGFGRVYKGKLEKTNKEVAVKQLDRNGLQGNREFLVEVLMLSLLHHKNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLEPRQKPLEWFHRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDREFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVQSDVYSFGVVLLELITGRRAIDNTRKPNEQNLVNWAEPIFKEPNRYSELADPVLEGKFPVRSLNQAVAIAAMCLNEEPSVRPLISDVVTALSFLGTIPKGEEEQLGTSPVDMPSPSHHPQQPTNASSNLLDQDIAAMERQRAVAEAIEWGNNSRNKAPHRQTPPSL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04111 421 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Vimu6g04111 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vimu6g04111 421 PANTHER OS07G0668900 PROTEIN 3 355 - -
Vimu6g04111 421 ProSiteProfiles Protein kinase domain profile. 72 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04111 421 MobiDBLite consensus disorder prediction 364 388 - -
Vimu6g04111 421 Gene3D Phosphorylase Kinase; domain 1 41 148 - -
Vimu6g04111 421 MobiDBLite consensus disorder prediction 354 421 - -
Vimu6g04111 421 MobiDBLite consensus disorder prediction 1 36 - -
Vimu6g04111 421 Pfam Protein kinase domain 74 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04111 421 CDD STKc_IRAK 78 346 - -
Vimu6g04111 421 Gene3D Transferase(Phosphotransferase) domain 1 149 359 - -
Vimu6g04111 421 SMART serkin_6 72 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04111 421 FunFam Serine/threonine-protein kinase PBS1 149 363 - -
Vimu6g04111 421 MobiDBLite consensus disorder prediction 1 50 - -
Vimu6g04111 421 SUPERFAMILY Protein kinase-like (PK-like) 58 375 IPR011009 -
Vimu6g04111 421 FunFam Serine/threonine-protein kinase PBS1 44 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04111 Vimu-Chr6 41835299 41837899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04111 1 409 Glycoside Hydrolase AT3G07070 68.750 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu6g04111 Pkinase 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04111 - - gmx:100786405 662.914