Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04109 ATGGCTTCCTCAATCTTACTCTTTCTCTTCCTACAATTCTTCTCTCTGCCCACTTCACATTCTGCATTTTCATCACTCACCACGGACTCATCCCTCTCGGTAGAGAAACCCGACGACGTTATTCTCTCCAAAAACGGCGTTTTCTCCGCCGGCTTTGTTGCCGCCGGTGAAAATGCCTACTCCTTTGCCGTATACTTCACACAAAACCGTTCCCACAACCACCCCACAATCGTGTGGATGGCGAACCGGGAGAACCCCGTCAACGGAAAACGTTCCAAACTCTCTCTCTCACGAACCGGTAACCTTGTCTTGGATGATGCTGCTCAACGAACGGTCTGGTCTTCGAACACTGCTTCGTTGGCTTCACCACTGTTGCATCTCAGAGACGATGGCAATCTCGTCTTGCGTGACCTCCAAGGAACCGTTCTGTGGCAAAGCTTTGATTTTCCCACCGATACTCTTCTTCCGGGACAACCCCTCACCAGACGCACGCAACTCGTGTCTGCAAGAAGCGACACTAACCAGTCCTCCGGTTTCTACAAGCTCTTCTTCGACGATGACAATGTTCTTCGTCTTCTTTTCGATGGCCCTGATGTTTCCAGCATTTACTGGCCATATCCATGGTTGCTGAGTTGGGACGCTGGAAGATCTACTTACAATAGCAGTAGATTGGCAGTGTTGGACTCACTCGGAAGATTCATTTCAACTGATAGTTTTACTTTCATTACATCTGATTATGGCGCTATGAAGCAGAGAAGATTGAAACTTGATTCTGATGGTAACCTTAGAGTGTATACACTGCATGATGAATGGTTTGTTTCGTGGCAAGCGAGAGGTGACCCTTGCAATATCCACGGGATTTGTGGACCTAACAGTGCGTGCAGTAATGATCATGAGCATGGAAGGAAGTGCTCGTGTCTTCCGGGACATAGAATCAAGAACCATAGCGATTGGTCTTATGGCTGTGAACCTGTGTTCGTTTTGTCTTGCAACAGAAGTGAGTCTACCTTCTTGGAGTTGCTGGGTGTTGAGATTTATGGTTATGATGCTAACTTTTCTGAAGGTAATAGCTATAGTTATTGTGAGAATCTGTGCTTAGAAGACTGTAACTGTAAGGGGTTTCAGTACTCATACAATGACGCCAAGAACTATTACAATTGTTATATCAAGATGCAATTGCTTAACGGGCGCCGATCACCGAGTTTCAGAGGAACAGTATACGTGAAAGTGCCTAAAAATCATAGCCTTTTCAGGGAAGAATCGTTTCGTTCAAATGAGCATGTTTGTGTTGTTCAAATTCCCAGGGTGTATGACAAATATCATGTAAAAAAGATTGTGAGGTTTTTTCTTTGGGTGGCCATTGTAATTGGTGCTATTGAATCGGTTTGCGTTTTAGTCGTGTGGGTTTTCATAGTTAAGACGCGCCGAAAGTCTCATGCAGATGAACACGATTACCATCCTCTGACCGATAGATTCAGAAAATATAGTTATTCAGAGTTGAAGAAGGCGACAAAGGGGTTCAGTGAAGAGATCGGAAGGGGGGCGGGAGGGGTTGTGTACAAAGGTATTTTATCAGATGAAAGGCATGCAGCAATTAAGAGACTGAATGAAGCTGAACAAGGAGAAGGAGAATTCCTTGCAGAAGTTAGCATCATTGGAAGGCTTAACCATATGAACTTGATTCAAATGTGGGGATATTGTGTTGAGGGAAAGCATAGATTGTTGGTTTCGATCATGGGTTTCTCAATCTCACTCTTTTTCCTTCTCTTGGCTCTTTCTTTTCAATCTTCATCTTCCCTCTCCTCGTTGAACAAGGGGTCCTCTCTCTCAGTGGAGAAACAAGCACAACGCTTTATTCTCTCACCTAATCAAATGTTCTGTGCTGGTTTCTTTCAAGTTGGCGAAAATGCCTTCTCCTTTGCCATATGGTTCAACGACCCTCACACTCACAACCCCACCAATGTGGTTTGGATGGCAAACCGTGATCAACCCGTAAATGGGAAACTCTCAAAGCTTTATCTTTTGAACAGTGGTAACATCATCTTGGTTGATGCTGGTCAAATCACCACTTGGTCATCAAACACAGCATCAGATGCCCCAGTAAAGTTGCATCTCCAAGATGATGGTAATCTTGTTCTAGATGAGCCCCAAGGAACCATTTTGTGGCAAAGTTTTGATTTTCCAACGGATACTCTGCTTCCTGGTCAACCTCTTACCAGATTCACACAACTTGTGTCTTCAAGAAGCTTCACAAATCATTCCTCTGGCTTCTATAACCTGCTATTTGACGATAACAATATTCTTAGTCTCATTTATGATGGCCCTGATGTTTCAAGCACATACTGGCCTCCCCCTTGGCTACTCAGTTGGCAAGCTGGAAGATTTAATTACAATAGCAGCAGAGTTGCAGTGTTCACTTCTCTTGGCAGTTTCATTTCATCAGATAATTATGCTTTCTCCACTTATGATCACGGCACGGTTATGCCCAGAAGATTAACACTGGACTCTGATGGTAACGTTCGTATGTACTCTAGAAATGAGGCTTTGAAGAAATGGTATGTTTCCTGGCAATTCATATTTGATACTTGCGGTATTCATGGGATTTGTGGAGCTAACAGCACTTGCAGCTTTGATCCTGAAAGGGGAAGGAGATGTTCGTGTTTACCGGGATACAGAGTGAAGAACCCTAGTGATTGGTCTTACGGGTGTGAACCCTTGTTTGATGTTACTTGCAATGGAAATGAGTCTACCTTTTTACAGATACAGGGCATGGAGTTATACGGCTATGATCGTAATTTTAGCCAAAACAGTACGTACATGAACTGTTTGAATTTATGCTTGCAAGATTGTAACTGCAAAGGTTTTCAGTATAGATATGATGAGGGGCAAGGATTTAGCTGCTACACAAAGTTACAGTTGAGGAATGGAAGGCAGTCACCAGGATATAATGGAACAATTTCGCTGAGACTGCCAAAAGGAAATAACTTCTCCAAGGAGGAACCTATGGGAGCAGAAGATCATGTTTGTTTGGTGCAGCTTCAAAAGGGCTATGTTACAAAGCCAGAAAATCGTTATGTGAGATTCTTTTTGTGGTTTGCTACTGCAGTTGGAGCTTTAGAATTGATTTGCCTTTCCATGGTTTGGGGTTTCTTGATGAGGACGCGCCAAAAGTCTAGTGCAGATCAACAAGGGTACCATGTTGCTGCAGTGGGAGTCAGAAAATATAGTTATTCAGAGTTGAAGAAGGCGACAAAGGGGTTCAGTGAAGAGATCGGAAGGGGTGCGGGAGGGGTTGTGTACAAAGGTATTTTATCAGATGAAAGACATGCAGCAATTAAGAAGCTGAATGAAGCTAAACAAGGAGAAGGAGAATTCCTTGCTGAAAAAAGGAGTGACACCTACTCCTCTTGGCTGGAACAAATCATTGATCCTGCAATTGAAACAAACTACAATAAATTTAAGATGGACCTTTTGGTTAGAGTGGCTTTGGCTTGTGTTGAGGAAAGTAAAGATTTGAGACCCACCATGAGTCAAGTTGTCGAAATGCTTCAAAGCCATGAAAGTAACCTTAAGTCATAA 3579 0.4334 MASSILLFLFLQFFSLPTSHSAFSSLTTDSSLSVEKPDDVILSKNGVFSAGFVAAGENAYSFAVYFTQNRSHNHPTIVWMANRENPVNGKRSKLSLSRTGNLVLDDAAQRTVWSSNTASLASPLLHLRDDGNLVLRDLQGTVLWQSFDFPTDTLLPGQPLTRRTQLVSARSDTNQSSGFYKLFFDDDNVLRLLFDGPDVSSIYWPYPWLLSWDAGRSTYNSSRLAVLDSLGRFISTDSFTFITSDYGAMKQRRLKLDSDGNLRVYTLHDEWFVSWQARGDPCNIHGICGPNSACSNDHEHGRKCSCLPGHRIKNHSDWSYGCEPVFVLSCNRSESTFLELLGVEIYGYDANFSEGNSYSYCENLCLEDCNCKGFQYSYNDAKNYYNCYIKMQLLNGRRSPSFRGTVYVKVPKNHSLFREESFRSNEHVCVVQIPRVYDKYHVKKIVRFFLWVAIVIGAIESVCVLVVWVFIVKTRRKSHADEHDYHPLTDRFRKYSYSELKKATKGFSEEIGRGAGGVVYKGILSDERHAAIKRLNEAEQGEGEFLAEVSIIGRLNHMNLIQMWGYCVEGKHRLLVSIMGFSISLFFLLLALSFQSSSSLSSLNKGSSLSVEKQAQRFILSPNQMFCAGFFQVGENAFSFAIWFNDPHTHNPTNVVWMANRDQPVNGKLSKLYLLNSGNIILVDAGQITTWSSNTASDAPVKLHLQDDGNLVLDEPQGTILWQSFDFPTDTLLPGQPLTRFTQLVSSRSFTNHSSGFYNLLFDDNNILSLIYDGPDVSSTYWPPPWLLSWQAGRFNYNSSRVAVFTSLGSFISSDNYAFSTYDHGTVMPRRLTLDSDGNVRMYSRNEALKKWYVSWQFIFDTCGIHGICGANSTCSFDPERGRRCSCLPGYRVKNPSDWSYGCEPLFDVTCNGNESTFLQIQGMELYGYDRNFSQNSTYMNCLNLCLQDCNCKGFQYRYDEGQGFSCYTKLQLRNGRQSPGYNGTISLRLPKGNNFSKEEPMGAEDHVCLVQLQKGYVTKPENRYVRFFLWFATAVGALELICLSMVWGFLMRTRQKSSADQQGYHVAAVGVRKYSYSELKKATKGFSEEIGRGAGGVVYKGILSDERHAAIKKLNEAKQGEGEFLAEKRSDTYSSWLEQIIDPAIETNYNKFKMDLLVRVALACVEESKDLRPTMSQVVEMLQSHESNLKS 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04109 1192 SUPERFAMILY alpha-D-mannose-specific plant lectins 655 742 IPR036426 -
Vimu6g04109 1192 Gene3D - 149 274 IPR036426 -
Vimu6g04109 1192 Gene3D - 727 852 IPR036426 -
Vimu6g04109 1192 Gene3D - 20 148 IPR036426 -
Vimu6g04109 1192 Gene3D - 596 726 IPR036426 -
Vimu6g04109 1192 CDD PAN_AP_plant 907 991 - -
Vimu6g04109 1192 ProSiteProfiles PAN/Apple domain profile. 330 411 IPR003609 -
Vimu6g04109 1192 FunFam S-receptor-like serine/threonine-protein kinase 474 578 - -
Vimu6g04109 1192 Pfam PAN-like domain 911 970 IPR003609 -
Vimu6g04109 1192 Pfam PAN-like domain 330 392 IPR003609 -
Vimu6g04109 1192 ProSiteProfiles EGF-like domain profile. 278 316 IPR000742 -
Vimu6g04109 1192 SUPERFAMILY Protein kinase-like (PK-like) 1063 1131 IPR011009 -
Vimu6g04109 1192 ProSiteProfiles PAN/Apple domain profile. 911 993 IPR003609 -
Vimu6g04109 1192 Gene3D Phosphorylase Kinase; domain 1 1049 1133 - -
Vimu6g04109 1192 Gene3D Phosphorylase Kinase; domain 1 469 577 - -
Vimu6g04109 1192 CDD B_lectin 617 728 IPR001480 -
Vimu6g04109 1192 FunFam Os04g0303100 protein 645 777 - -
Vimu6g04109 1192 CDD PAN_AP_plant 326 411 - -
Vimu6g04109 1192 SMART blect_4 610 728 IPR001480 -
Vimu6g04109 1192 SMART blect_4 32 150 IPR001480 -
Vimu6g04109 1192 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Vimu6g04109 1192 PANTHER OS07G0415500 PROTEIN 3 576 - -
Vimu6g04109 1192 FunFam Os04g0303100 protein 67 198 - -
Vimu6g04109 1192 Pfam D-mannose binding lectin 76 164 IPR001480 -
Vimu6g04109 1192 Pfam D-mannose binding lectin 655 741 IPR001480 -
Vimu6g04109 1192 SMART ntp_6 332 410 IPR003609 -
Vimu6g04109 1192 SMART ntp_6 913 990 IPR003609 -
Vimu6g04109 1192 Pfam Protein kinase domain 508 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04109 1192 ProSiteProfiles EGF-like domain profile. 859 897 IPR000742 -
Vimu6g04109 1192 ProSitePatterns Protein kinases ATP-binding region signature. 1091 1114 IPR017441 GO:0005524
Vimu6g04109 1192 CDD B_lectin 41 150 IPR001480 -
Vimu6g04109 1192 Pfam S-locus glycoprotein domain 238 313 IPR000858 GO:0048544
Vimu6g04109 1192 Pfam S-locus glycoprotein domain 790 894 IPR000858 GO:0048544
Vimu6g04109 1192 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Vimu6g04109 1192 FunFam Serine/threonine-protein kinase 729 856 - -
Vimu6g04109 1192 Gene3D Hepatocyte Growth Factor 339 408 - -
Vimu6g04109 1192 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 207 IPR036426 -
Vimu6g04109 1192 SUPERFAMILY Protein kinase-like (PK-like) 483 576 IPR011009 -
Vimu6g04109 1192 ProSiteProfiles Bulb-type lectin domain profile. 594 726 IPR001480 -
Vimu6g04109 1192 FunFam Putative receptor protein kinase ZmPK1 597 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04109 Vimu-Chr6 41803852 41814100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04109 434 576 Receptor kinase-like Gene Family AT1G56120 35.616 1.26e-20 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu6g04109 S_locus_glycop 8.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04109 - - gmx:100785351 899.427