Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04106 ATGTTTGATCTCACCTGCGATCAGAATGAGTCTACCTTCTTGGAGATGAAGGGTGTGGAATTTTACGGGTATGATTTTTATTATGTAGAAGTTAGTAATTTTACTGCTTGTGAGGAACTGTGCTTGCAAAGTTGTAGTTGTGTAGGGTTTCAGCACTCCTATACTGACGAAAAGGGCATAGCCTTGTGTTATACCAAAACACAATTGCTCAATGGAAGGCGTTTACCCAGATTCACAGGAACAACATACTTGAGAGTGACCAAAGGTTATAGCTTCTCTGTGAAAGAATCTTCTAATGACACTTCTCATGTTCTTCGAGTTTGTTCAGTTCAACTTCAAAGAGATTATGTAAAATCACAAGGAAGCCGTATTGTGATTGTTTTTCTGTGGTTTGCTTCCGCACTTGGAGGGTTTGAAATGGTTTGTGCTTTCGTGATTTGGTGCTTCCTAATTAGAACCAACCGAAAGTCTAAAGCAGATCAAAAGGGGTACCATCTTACAGCAACGGGATTCAGAAAATTTAGCTACTCCGAGCTGAAAAAGGCTACAAAGGGGTTCAGTAAAGAGATTGGAAGAGGTGGGGGAGGGGTTGTGTACGAAGGTATTTTATCAGATGAAAGACATGCAGCAATTAAGAGACTGAATGAAGCTAAACAAGGAGAAGGAGAATTCCTTGCTGAAGTGAGCATCATTGGAAAGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGATTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTGGCAGAAAGTCTCTCAACTAACAAACTTGATTGGAGTAAGAGATACAACATTGCAATTGGAACTGCAAGAGTTCTGGCATATCTGCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAAAATATACTTCTAGATTCCAATTATGAGCCAAAGTTAGCAGACTTTGGCTTGTCTAAGCTCCTCAACAGAAACAACCCCAACAATCCAAGCATCTCTATGATCAGAGGAACGAGAGGGTATATGGCACCTGAGTGGGTTCTTAACTTGCCAATCACATCCAAGGTGGATGTTTATAGCTATGGAATTGTTGTTTTGGAACTGGTAACTGGAAAAAGCACAACAAGTGTCCAAGAAATTGATGGTGGAGAGACATATGATGGGAGGCTAGTGGCATGGGTGAGAGAAAAAAGAAGCAACACCAACTCAGATTGGGTGGAACAAATAGTTGAACCTGCTATTGGACCTGATTATGATAGAAGTAAGATGGAAATGTTGACAACAGTGGCTTTGAACTGTGTAATGGAAGACAGAGATTCAAGGCCTACCATGAGCCAAGTAGTTGAGATGCTTCAAGGTCATGGAACTGAATCTGATTGA 1401 0.4069 MFDLTCDQNESTFLEMKGVEFYGYDFYYVEVSNFTACEELCLQSCSCVGFQHSYTDEKGIALCYTKTQLLNGRRLPRFTGTTYLRVTKGYSFSVKESSNDTSHVLRVCSVQLQRDYVKSQGSRIVIVFLWFASALGGFEMVCAFVIWCFLIRTNRKSKADQKGYHLTATGFRKFSYSELKKATKGFSKEIGRGGGGVVYEGILSDERHAAIKRLNEAKQGEGEFLAEVSIIGKLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAESLSTNKLDWSKRYNIAIGTARVLAYLHEECLEWILHCDIKPQNILLDSNYEPKLADFGLSKLLNRNNPNNPSISMIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLELVTGKSTTSVQEIDGGETYDGRLVAWVREKRSNTNSDWVEQIVEPAIGPDYDRSKMEMLTTVALNCVMEDRDSRPTMSQVVEMLQGHGTESD 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04106 466 CDD PAN_AP_plant 2 86 - -
Vimu6g04106 466 ProSiteProfiles PAN/Apple domain profile. 6 88 IPR003609 -
Vimu6g04106 466 ProSitePatterns Protein kinases ATP-binding region signature. 190 212 IPR017441 GO:0005524
Vimu6g04106 466 PANTHER OS07G0415500 PROTEIN 6 461 - -
Vimu6g04106 466 Gene3D Hepatocyte Growth Factor 14 97 - -
Vimu6g04106 466 FunFam Serine/threonine-protein kinase 259 466 - -
Vimu6g04106 466 Gene3D Phosphorylase Kinase; domain 1 149 258 - -
Vimu6g04106 466 Gene3D Transferase(Phosphotransferase) domain 1 259 465 - -
Vimu6g04106 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Vimu6g04106 466 FunFam S-receptor-like serine/threonine-protein kinase 153 258 - -
Vimu6g04106 466 ProSiteProfiles Protein kinase domain profile. 184 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04106 466 SMART serkin_6 184 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04106 466 Pfam Protein kinase domain 187 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04106 466 Pfam PAN-like domain 6 68 IPR003609 -
Vimu6g04106 466 SUPERFAMILY Protein kinase-like (PK-like) 163 458 IPR011009 -
Vimu6g04106 466 CDD STKc_IRAK 190 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04106 Vimu-Chr6 41695948 41697348 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04106 112 458 Receptor kinase-like Gene Family AT3G58690 34.865 1.85e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu6g04106 Pkinase 1.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04106 - - vra:106758305 925.235