Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04091 ATGGGTAAAATCGATCTAGATAGTTTTCTAGGGGTAGATCCTGAAGTGGTTAAACTCAGACTAGATGTGTTATCTAGAAGTGTTAAGAGTGGCTATAATACTCAACCAGGAATGGATTATACTCGAAATACTAAACTAGGAACGAGTTATACTAAACTAGGAACGAGTTATACACGGAACCAAGAGTGGTGTAAGAATACTCAACCAGGATCTCCGGCAACAAAAAACCCTAATCCAGTAATCCCTCTGCGCCTCCCTCTTATACTCAAAACCTTAGCAGATACACACAGCAGAAGAAACCAAAGAACCAACCTTCAGTGTTGTGTGGAGAGAGAAAGAGAGAGAAAAAAAATGGTTTCAGGGTCAGGGATCTGCGCGAAGAGGGTGGTGGTGGACGCTCGCCACCACATGCTGGGAAGGTTGGCCTCGATCGTGGCCAAGGAACTTCTCAATGGGCAGAAGGTCGTGGTGGTGAGGTGCGAGGAGATTTGCATCTCTGGCGGACTCGTGAGGCAGAAGATGAAGTACATGCGCTTTCTCCGCAAGCGCATGAACACCAAACCCTCTCACGGCCCTATTCACTTCCGGGCTCCCGCCAAGATCTTCTGGCGCACCGTTCGCGGGATATTGATGTTGTTAATTCGTGGGAAGATTTTTCTGAAATGGGTGTTTGTTTGCAGGATGATTCCTCATAAGACTAAGCGTGGGGAAGCTGCTCTTGATCGATTGAAGGTTTATGAGGGTATTCCTCCTCCATACGATAAGACTAAGAGGATGGTTGTCCCTGATGCTCTCAAGGTGCTGAGGCTTCAGAAGGGGCACAAATACTGTCTTCTAGGCAAATTGTCATCTGAGGTTGGATGGAACTATTATGATACGATCAGGTGTAGCACCAAAGGGAACTATACTAAGGCTCTGCCACTTATGGAAATTTTGCCTTATTCAGTGGAACTGGAAAAGAAGAGGAAGGAGAGGGCACAATTGTCTTATGAGAGGAAGAAGCAGCTTGCCAAATTGAGGGTGAAAGCTGAGAAGGTTGCAGAGGAGAAGCTCGGTTCCCAAATTGAAATCCTTGCTCCCGTTAATTTGGACGTGAATCGCGACTTCGTTGTACGTGTCCGTCAAGTGGTTGGAGTTGAATTTGCTGGAAGCTACTTAAAGTATGAAGGGAAAATTGAGACAATGTATTTTGATCCTGACGTATGGAATTATTTTGTGGTAGTGAGTGTAGTCAAAAGTCTTAGGTACGATGGTTTTAAGGAGTTGTGGTATTATGTTGGTTGTGGTCCTGTCTTAGATGATAGGCTAGAAGCATTGACTGATGACGTATGTGTCATGCAAATGGTCACTTTTGCTCACTTAAATGGACGAATTCATTTATATGTTGTGCACATTGTGTCTGAGCCTGATGTCATTCACATGATTGAGTACAGTGTTGATGAAGGAGGTGAGGAAGTTGCACCATTTGTTGAGGGTATAGAGGAGGGTGGTGAGGGTGCACAATTGGTTGAGGGTATAGAGGATGGTGGGGTACGTGCTGATGGTGAGAGGATAGAAGTTGTTGTTGAGCAGGCTGAGGAAGTTGATGGTGAGGCTGAGAGGACAGTAGCATATGAATTGCAGCAAGAGAGGATAGAGGTTGAGAGGACAACAACATATGAATTGCAGCAAGAGAAAATAGAGGCTGAGGAAATTGATGGTGAGGCTGAGAGGACAACAACATATGAAGTGCAGCAACAAAGGATAGAGGCTGAGGAAGTTGATGCTGAGCAAGTTCATGTTCAAGATGGAGTTGAAGTTGAGGCTGAGATGATAGAGGTTGATGAAAATGATGTTCAAGGACAGAGGCAGCTGAATATTGAGGTTGATAGGGCAGAAGCAGCTGAAGTTGAACTTGAGGTTCATAGTATTGAGGTTGATAGGGCAGAAACAGCTGAAGCTCATAGTATTGAGGTTGATAAGGCAGAAGCAGTTGAAGTTGAAGTTCAATCTGATAGGATAGAAGCACGGGATGGTGAAGGTGATACATTAGATGGTGAGCCTTACAGAATAGAAGTTGGTGACTTGGATGATGTACAAGTTCGTGATTGGAGTTCAACACAGGAAAGTGATGATGGTGAGATGGATAATGAGGATGGGTTAGTAGACATATATGTTCAGTGTGATGTAAGTGAAAGTTGTAGTGATTTGGAGGTTGAGGTTGAACCTTTTCTACCTGGGTCTGATTCAGATATGGAGGAAGATGAGATTAATGATTCTAGTTGGTTCAATGACAAATGGCAATCTGAGGAATTAACTTCTCCTCACAATATTAATGAAGACAGTGAACACAAAGGGTATGGCCATTTTTCCACATTTAGTCAGCCAAAAAATATGCTTTATTTTAACTGGGAAGTGGGAACTTACTTCGTGGATAAAGAAGACATCCTTGATGCCATCAAAAGTTATGCAATAGAGAATGGGAAAAATTTGAAACTTGGAGTTGATATTAGAGAAAAAGTTACTAGGAAATGGAATATAGCAATATCTAAGAATATGGCTTACAGGACCAAAACATATGCATCAGACGAAGTGGCAGGCTCCTTCACTAAGCAATATAGTAGAATTTTTTATTATGCTCATGAGTTATTAGCAAGAAACCCTGGGTCTCAATCAAGGCCAATCATTTGCCTTGATGGAGCCTTCTTGAAAGGCAGACATCATGGTGAGCTATTAACTGCTGTGGCGCGAGATGCAAACGACCAAATGTTGCCATTGACGTACGCAATCGTTGAAGTTGAGAACAAGGAGACCTGGACATGGTTTCTGGAGCTATTGATTGAAGACCTAGGTGGTTCAGATGTGTGTTCTGGACTTACAATCATGTCAGATCAACAGAAGGGTTTAAGACATGTTGTAGAAGATGTTATTCCTGGAGTTGCACAAAGATTTTGTGTAAGGCATTTATATGCCAACTTCAGGAAAAAATTCCCTGGAAAAAACTTGAAAAGACTTATGTGGAGGGCAGCTACAACAACCCACCCACAACAATGGGAGAATGAGATGAGAAATATGAAAGAGGTGAACGAAGATGCTTTTAGACATATGATAGCAATTCCTCCAAGATCAAGATTCACAACCACGGCTCAATGTGATACCTTGATGATGAAGAGATGGGCCACTAATAGGTCAAGGGTAACTTCGTTTAAGTCAGCAAATTGTCCTAAAATTCTGAGTAGAGTACAAAAAGAGGCACTACAAACAAAGAATTGGATTCCCAGCATCAGTGGAATTCCTTGTTTGCATGCATTGACAGCAATGAGGTTTCTGAACCTAGATGCAGAGGACTACCTGCCTGTCACCCAATGTCCAAATGTCTTGTCTCCACCAAAAAGACAGTTGTCTGGTCGTCCTAAGAAGAAAAGGAGATTAGAGCAACGGGAGTTGAAGAAAAGTACCACCAAAATGTCAAAAGGGGGCTTACTAAAGAGATGTACCATCTGTAGGGAAGTGGGTCACAGCAAAAGAAATTGCCCCAAAAGAAGCCAAGTTACATTGCCTCGGGGTCAGGAAGAGGGAGAACCCAACACATTGCCTCAGGGTCAACCAGATGGAGCAAATACAAATAACACTTGA 3615 0.4296 MGKIDLDSFLGVDPEVVKLRLDVLSRSVKSGYNTQPGMDYTRNTKLGTSYTKLGTSYTRNQEWCKNTQPGSPATKNPNPVIPLRLPLILKTLADTHSRRNQRTNLQCCVERERERKKMVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGILMLLIRGKIFLKWVFVCRMIPHKTKRGEAALDRLKVYEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCLLGKLSSEVGWNYYDTIRCSTKGNYTKALPLMEILPYSVELEKKRKERAQLSYERKKQLAKLRVKAEKVAEEKLGSQIEILAPVNLDVNRDFVVRVRQVVGVEFAGSYLKYEGKIETMYFDPDVWNYFVVVSVVKSLRYDGFKELWYYVGCGPVLDDRLEALTDDVCVMQMVTFAHLNGRIHLYVVHIVSEPDVIHMIEYSVDEGGEEVAPFVEGIEEGGEGAQLVEGIEDGGVRADGERIEVVVEQAEEVDGEAERTVAYELQQERIEVERTTTYELQQEKIEAEEIDGEAERTTTYEVQQQRIEAEEVDAEQVHVQDGVEVEAEMIEVDENDVQGQRQLNIEVDRAEAAEVELEVHSIEVDRAETAEAHSIEVDKAEAVEVEVQSDRIEARDGEGDTLDGEPYRIEVGDLDDVQVRDWSSTQESDDGEMDNEDGLVDIYVQCDVSESCSDLEVEVEPFLPGSDSDMEEDEINDSSWFNDKWQSEELTSPHNINEDSEHKGYGHFSTFSQPKNMLYFNWEVGTYFVDKEDILDAIKSYAIENGKNLKLGVDIREKVTRKWNIAISKNMAYRTKTYASDEVAGSFTKQYSRIFYYAHELLARNPGSQSRPIICLDGAFLKGRHHGELLTAVARDANDQMLPLTYAIVEVENKETWTWFLELLIEDLGGSDVCSGLTIMSDQQKGLRHVVEDVIPGVAQRFCVRHLYANFRKKFPGKNLKRLMWRAATTTHPQQWENEMRNMKEVNEDAFRHMIAIPPRSRFTTTAQCDTLMMKRWATNRSRVTSFKSANCPKILSRVQKEALQTKNWIPSISGIPCLHALTAMRFLNLDAEDYLPVTQCPNVLSPPKRQLSGRPKKKRRLEQRELKKSTTKMSKGGLLKRCTICREVGHSKRNCPKRSQVTLPRGQEEGEPNTLPQGQPDGANTNNT 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04091 1204 MobiDBLite consensus disorder prediction 1169 1204 - -
Vimu6g04091 1204 FunFam 60S ribosomal protein L13a 316 363 - -
Vimu6g04091 1204 Coils Coil 625 645 - -
Vimu6g04091 1204 MobiDBLite consensus disorder prediction 1188 1204 - -
Vimu6g04091 1204 Gene3D - 316 363 - -
Vimu6g04091 1204 MobiDBLite consensus disorder prediction 1118 1150 - -
Vimu6g04091 1204 Pfam MULE transposase domain 888 985 IPR018289 -
Vimu6g04091 1204 Gene3D Ribosomal protein L13 125 290 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vimu6g04091 1204 Pfam Ribosomal protein L13 128 211 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vimu6g04091 1204 ProSitePatterns Transposases, Mutator family, signature. 957 981 IPR001207 GO:0003677|GO:0004803|GO:0006313
Vimu6g04091 1204 FunFam 60S ribosomal protein L16 124 290 - -
Vimu6g04091 1204 SUPERFAMILY Ribosomal protein L13 127 290 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vimu6g04091 1204 PANTHER RIBOSOMAL PROTEIN L13 118 345 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vimu6g04091 1204 Hamap 50S ribosomal protein L13 [rplM]. 128 271 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vimu6g04091 1204 CDD Ribosomal_L13 129 249 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04091 Vimu-Chr6 41264183 41272586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04091 118 362 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 73.878 1.64e-116 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04091 K02872 - vra:111242285 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04091 6 41264183 41272586 Vimu6g04091 6 41264183 41272586 ECH