Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04084 ATGTCTCTTCCAACACTCGTAGATACTAAGGAAAACACCACCAACACTACTTTCCCTAAACTCAATATCAAAGATGGAGGAACACCCTCTTCTTCTCGAGCTCCTTCTTCTTCACACAAAACACATAACACAGAAGATAGCGATGAAGATGTGTTCACTGTTCCAGATGTGGAAACTGCAGGAAGTGTAGATTGTGCAGGCAGAAATGGATGTAGCAGTAATGTTAATGAAAGTAAGTTGACAGATCCACAGATACATTATTCTGGTTTTCCTGGAAAACGGCGTCAGGGAAGAAACCCTGTCGACAAAGAGCATAGACGCCATAAACGGTTGTTAAGGAACAGGGTTTCTGCTCAACAAGCCCGCGAAAGGAAAAAGGTTTACGTAAATGACTTGGAATCAAGAGCTGTGGAGTTGGAAGAGAAGAACACCAATTTAGAAGAGCGAATTTCAACGTTGATAAATGAAAACACCATGCTGCGAAAGGTTCTCATGAACACCAGGGCCAAAGTTGACCACAATGAAGCGTAG 531 0.4256 MSLPTLVDTKENTTNTTFPKLNIKDGGTPSSSRAPSSSHKTHNTEDSDEDVFTVPDVETAGSVDCAGRNGCSSNVNESKLTDPQIHYSGFPGKRRQGRNPVDKEHRRHKRLLRNRVSAQQARERKKVYVNDLESRAVELEEKNTNLEERISTLINENTMLRKVLMNTRAKVDHNEA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04084 176 Gene3D Single helix bin 125 166 - -
Vimu6g04084 176 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 28 173 IPR044280 GO:0000981|GO:0045944
Vimu6g04084 176 SMART brlzneu 102 166 IPR004827 GO:0003700|GO:0006355
Vimu6g04084 176 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 104 167 IPR004827 GO:0003700|GO:0006355
Vimu6g04084 176 Pfam bZIP transcription factor 103 162 IPR004827 GO:0003700|GO:0006355
Vimu6g04084 176 SUPERFAMILY Leucine zipper domain 106 165 IPR046347 GO:0003700|GO:0006355
Vimu6g04084 176 MobiDBLite consensus disorder prediction 1 51 - -
Vimu6g04084 176 Coils Coil 122 156 - -
Vimu6g04084 176 CDD bZIP_HY5-like 107 157 - -
Vimu6g04084 176 MobiDBLite consensus disorder prediction 67 83 - -
Vimu6g04084 176 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 109 124 IPR004827 GO:0003700|GO:0006355
Vimu6g04084 176 MobiDBLite consensus disorder prediction 1 38 - -
Vimu6g04084 176 MobiDBLite consensus disorder prediction 67 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04084 Vimu-Chr6 41189417 41197647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04084 59 174 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 63.793 4.40e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu6g04084 bZIP_1 1.5e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04084 K16241 - gmx:778143 179.489