Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04048 ATGTGTGTGATAGAAGGTCACCGGAGGGTAACACTACATGAAGAAATGTCAGCTTCCGATAGCAGCCGAGCCCGTGTGCTAGCCGGCTTGACCCTCGACGACGTGTTAGCGAACCAGAAGAGACCTTCCTCGACGCCGCCCAGGGAACCACCGCCCAAGAACCGAACCCTACTTGACATCATCAAAGACGACGAATCCAACAAAAAGGATCGCAGGCTAAAGCGCGCAGGGTCTGCTTGGATATCGACAATTCATATCCCTACTTCGGATGTTCCTATTCCTAACCCGAATAGTAGAATCTTTACCCAGTTAGGTCGCCGTAACTCGGTCCGATTCCCCACTCAGACTACAACTCCGACTCTGTCGCTGACTCAGACTCCAGCTCAGTCCGACTCTGACATGTCATCGAACTACATGACTCACCAGGTCGAGGACCTCAACCCCGCCACCGAAGACTCCGGTCCTCCGGCCACCGCACCCCCCGCAATCCGCCCCACGTTTAGCCGCCGCGGCTCCACCCGCTTCACCGGCGAAACCGCCGAGAACAACACCGCCGGGACCCTGCGGCCGCAGCTCTCGTTGAGAAGCTCGACCAACATGCCGACGGCGGAGCCGTACCGGCGGGGGAGGGTGGTGACCTTCCGCGACAGCTTCGACGACGAGGATGGGGAGGAGGACGGGGAGAAGCCGGGGGAGGGGAGGGCGCTGTCAGCAAGGGAGGCGGTTGCGGCGCAGGAGGCATCGGAAGCGGCGGCGCAGGAGGCGGAGGCGGAGGAGGAACAGGCGCCGGTGATGATGTCGCTGATGGACTTGTTAGAGGAGACTGATAGGGAAATGGGGCTTGAAGGATCAAGGTATATATTAAGTGATGATGAGGATTTTGATGAGGATGCAGATGATGATGGTGAAGATGGAGATGGAGGGGGTTCCATGGAGCACACTTGCTGTATTTGCATGGTCAGGCATAAAGCTGCTTCTTTTATACCATGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTTAGTAGGGGGAATTGCCCACTCTGCAACAATTTCATTTTGGAGATTCTTGAAATTTTTTAA 1092 0.5623 MCVIEGHRRVTLHEEMSASDSSRARVLAGLTLDDVLANQKRPSSTPPREPPPKNRTLLDIIKDDESNKKDRRLKRAGSAWISTIHIPTSDVPIPNPNSRIFTQLGRRNSVRFPTQTTTPTLSLTQTPAQSDSDMSSNYMTHQVEDLNPATEDSGPPATAPPAIRPTFSRRGSTRFTGETAENNTAGTLRPQLSLRSSTNMPTAEPYRRGRVVTFRDSFDDEDGEEDGEKPGEGRALSAREAVAAQEASEAAAQEAEAEEEQAPVMMSLMDLLEETDREMGLEGSRYILSDDEDFDEDADDDGEDGDGGGSMEHTCCICMVRHKAASFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILEIF 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04048 363 MobiDBLite consensus disorder prediction 107 235 - -
Vimu6g04048 363 ProSiteProfiles Zinc finger RING-type profile. 315 353 IPR001841 -
Vimu6g04048 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 363 IPR013083 -
Vimu6g04048 363 SMART ring_2 315 352 IPR001841 -
Vimu6g04048 363 MobiDBLite consensus disorder prediction 37 56 - -
Vimu6g04048 363 Pfam Zinc finger, C3HC4 type (RING finger) 312 356 - -
Vimu6g04048 363 MobiDBLite consensus disorder prediction 169 203 - -
Vimu6g04048 363 PANTHER OS01G0917900 PROTEIN 23 363 - -
Vimu6g04048 363 MobiDBLite consensus disorder prediction 107 147 - -
Vimu6g04048 363 SUPERFAMILY RING/U-box 314 359 - -
Vimu6g04048 363 Coils Coil 238 261 - -
Vimu6g04048 363 CDD RING-HC 314 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04048 Vimu-Chr6 40659394 40660942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04048 22 363 C3H Transcription Factor Family AT3G07120 33.763 8.79e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04048 - - var:108328735 578.556