Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04046 ATGAAAGACATACAAGGTTACCTTGCTCTATTCTTCCTGTGGCTCTTTTCCACCATTTTTATTCGATCAATCTTCAAAAAATCACAGAAACTTCCACCTGGCCCTCCCATCTCAATACCCTTCCTAGGGCACGCGCCCTATCTCCGTTCGGTGCTTCACCAAGCACTGTACAAACTCTCCCTACGTTATGGTCCCTTGATCCATATCAAGATCGGGTACAAAAACATAGTTGTAGCGTCGTCGGCGGAGACAGCAAAAGAGATCCTTAAAACGTCTGAAGAGGCGTTCTGCAACCGTCCCTTAATGATTGCGAGTGAGAGTTTAACTTATGGCGCTGCCGACTACTTTTTCATTCCGTACGGGACCTACTGGCGGTTTCTGAAGAAGCTCTGCATGACGGAACTTCTGAGCGGGAAGACTCTGGAGCATTTTGTGGGCATTCGCGAGAGTGAGGTGGAAGCGTTTTTGAAGCGGATGTTGGAGATGTCGGCGACCGGGAAGGAGGTGGTGATGAGACAAGAGCTGATAACGCACACGAACAACATTATCACGAGGATGATCATGGGGAAGAAGAGCAGTGGTGCGGATGATTTTGTGGCGCAGTTGAGGAAGGTGGTGAGGGAAGTGGGGGAGTTGCTGGGGGCGTTCAACTTGGGAGATATTTTGGGATTTGCGAAGCCTTTTGATGTGCAGGGGTATGGGAAGAAGAACATGGAAACGCACCGTAAGGTTGATACGATGATGGAGAAGGTGCTTAAGGAGCATGAAGAGGCGAGGGCCAAAGCAGGTGCTGACAGTGATAGGAAGAAAGATCTCTTCGACATTCTCTTGAACCTCATTGAAGCTGATGGTGCTGACAATAAACTCACAAGGGAAAGTGCCAAAGCCTTTGCTCTGGACATGTTCATCGCCGGCACAAATGGACCCGCTAGTGTTCTGGAATGGTCCCTCGCGGAGCTGGTGCGAAACCCGGAGGTGTTGAAGAAGGCGAGAGAGGAGATAGAGTGTGTGGTGGGAAAGGATAGGCTGGTGAAGGAGTCAGACATTCCTAATCTCCCTTATCTGCAAGCAGTGGTGAAGGAGACTCTGAGAATGCATCCTCCGACCCCAATCTTCGCGCGAGAAGCCATGCGCACGTGCCAGGTTGCCGGCTACGACATCCCTGCTCACTCCACCATCATGATCAGCACGTGGGCCATCGGCAGAGACCCCAACTACTGGGACAACCCGCTGGAGTATAACCCAGAGAGGTTCTTGGTTTCCGATGAGCTTGGAAAAGGCAAAATCGACGTGAGGGGACAGTACTACCAGCTTCTACCCTTCGGAAGTGGACGAAGAAGCTGCCCCGGAGCCTCACTTGCGTTACTCGTCATGCAAGGCACACTCGCGAGTTTGATACAGTGCTTCGATTGGGTGGTGAATGATGGGAAGAGTCACGACATTGACATGACGGAGGAGGGAAGAGTGACGGTGTTTTTGGCGAAGCCGCTTACGTGCAAGCCTGTTCCGCGGTTCACTCCCTTCGCTGCATGA 1533 0.516 MKDIQGYLALFFLWLFSTIFIRSIFKKSQKLPPGPPISIPFLGHAPYLRSVLHQALYKLSLRYGPLIHIKIGYKNIVVASSAETAKEILKTSEEAFCNRPLMIASESLTYGAADYFFIPYGTYWRFLKKLCMTELLSGKTLEHFVGIRESEVEAFLKRMLEMSATGKEVVMRQELITHTNNIITRMIMGKKSSGADDFVAQLRKVVREVGELLGAFNLGDILGFAKPFDVQGYGKKNMETHRKVDTMMEKVLKEHEEARAKAGADSDRKKDLFDILLNLIEADGADNKLTRESAKAFALDMFIAGTNGPASVLEWSLAELVRNPEVLKKAREEIECVVGKDRLVKESDIPNLPYLQAVVKETLRMHPPTPIFAREAMRTCQVAGYDIPAHSTIMISTWAIGRDPNYWDNPLEYNPERFLVSDELGKGKIDVRGQYYQLLPFGSGRRSCPGASLALLVMQGTLASLIQCFDWVVNDGKSHDIDMTEEGRVTVFLAKPLTCKPVPRFTPFAA 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04046 510 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 Pfam Cytochrome P450 32 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 FunFam Cytochrome P450 family protein 24 499 - -
Vimu6g04046 510 Gene3D Cytochrome P450 23 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Vimu6g04046 510 PANTHER CYTOCHROME P450 98A9 9 504 - -
Vimu6g04046 510 CDD CYP93 64 501 - -
Vimu6g04046 510 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 PRINTS P450 superfamily signature 448 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g04046 510 SUPERFAMILY Cytochrome P450 25 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04046 Vimu-Chr6 40597350 40599658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04046 1 504 Cytochrome P450 AT5G06900 40.945 1.86e-136 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04046 K24188 K15814 gmx:100037459 895.96