Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04044 ATGTATAATAAGAAAAACAAGCAAAAGCTTCCTCAAAATGCACCCAAAGGTCTTACAAGTAAATTGGGGATTGAAGACGATGATGAAGTGTTGTATCCTTTAGACCTGGAAGACCTACGAAAGGATGTCGAATGCCCAATTTGCCTTGGGATCATTCGAAATACAAGAACTGTCATGGAATGCATGCATCGCTTTTGCAAGGAGTGCATAGAGAAATCCTTTCGCCTCGGTAACAATGAATGCCCTGCTTGTCGTACTCATTGTTCAAGCCGAAGATCGCTAAGGGAAGACATCCTCTTTGATGAAATAATTGCTGCCCTTTATCCAAACATTGATAAATACGAGGAAAAGGAAATGGCTTTTTCGGATGATGCAAAAAATAATATAAAGTCAATGCAAGAAGCTTATGGCAAGACTCTTGAACGACAAAGTGAGGCACTGGGAAAGAAGGCGGCTGCTGCTGTTGCTGCAAAAGATAAATACTCAAGGAGTGCAACTCAGACATCGAGAAGAAGTGCAAGAAATGCAAGTGCATTTTCAGAATCTAGTTCTAGCAGGGACATGACATTGCCTCCTATTGCTGAAGAGAGAGAGACACAAGTCATACCTGTCAGTAACTTTGCTGAGTTACAGATACAGCCACAAAGCTCTCAGCATGAGATTAATGCAAGCACAGTTGCAGGTGGAACAATTCAAAGTCTCATTACCTCATCTGATAAACTTGTATGGGGGCGATTTGGCCTCAGGAGTCACACCAATAGCAATGCTAGACATGCTGCTGCTTTGAGGAGCAAACGCTTGGGAAGATTCATTGATCATCTGCATAACTCCAATCAAAATGATCACGAGCTGGACATCTATATCAAACTTGTCTCTTTTGAGGAAGAAAGAGTGCCAAATTTGTCAAGGCCATACCTTAACTGCAAACCTACTCTCTCAATCGAGCAACTTTGCAAGTATGTTGCCATAGAAACCTTGCTGCAAACTGAAGAAATTGAATTGTACGTGGTGAAGGGGTGTGAACCTGGCTTTGTAAGTGGTCGTGAAAAATTTGTTGCAGACAAATATGAGACTCAATTTCTTGGGAGAGGGGATCAAACTTTGGCTGAAATCATAGCAAACAATCTCAGCTTTGGTCATCTGGTCATAGCTTACAAGAGGAAGAAGTGGAACTTGAATGAAGTGTTGTCTTCCTCTGGTTCTGAATGA 1209 0.4169 MYNKKNKQKLPQNAPKGLTSKLGIEDDDEVLYPLDLEDLRKDVECPICLGIIRNTRTVMECMHRFCKECIEKSFRLGNNECPACRTHCSSRRSLREDILFDEIIAALYPNIDKYEEKEMAFSDDAKNNIKSMQEAYGKTLERQSEALGKKAAAAVAAKDKYSRSATQTSRRSARNASAFSESSSSRDMTLPPIAEERETQVIPVSNFAELQIQPQSSQHEINASTVAGGTIQSLITSSDKLVWGRFGLRSHTNSNARHAAALRSKRLGRFIDHLHNSNQNDHELDIYIKLVSFEEERVPNLSRPYLNCKPTLSIEQLCKYVAIETLLQTEEIELYVVKGCEPGFVSGREKFVADKYETQFLGRGDQTLAEIIANNLSFGHLVIAYKRKKWNLNEVLSSSGSE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04044 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 115 IPR013083 -
Vimu6g04044 402 ProSiteProfiles Zinc finger RING-type profile. 45 85 IPR001841 -
Vimu6g04044 402 MobiDBLite consensus disorder prediction 161 189 - -
Vimu6g04044 402 MobiDBLite consensus disorder prediction 1 15 - -
Vimu6g04044 402 MobiDBLite consensus disorder prediction 1 20 - -
Vimu6g04044 402 SUPERFAMILY RING/U-box 36 116 - -
Vimu6g04044 402 MobiDBLite consensus disorder prediction 158 189 - -
Vimu6g04044 402 SMART ring_2 45 84 IPR001841 -
Vimu6g04044 402 PANTHER OS11G0578200 PROTEIN 24 390 IPR044592 -
Vimu6g04044 402 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Vimu6g04044 402 CDD RING-HC_RING1-like 42 107 - -
Vimu6g04044 402 Pfam Zinc finger, C3HC4 type (RING finger) 44 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04044 Vimu-Chr6 40567526 40574810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04044 45 181 C3H Transcription Factor Family AT2G30580 27.972 3.69e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04044 K10695 - gmx:102666848 454.136