Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04036 ATGGGTAAGATTGAACTGGTAGAGAAAATTGTAGTTGTTCCTGAGCACCCTACACCACACAAGAGAATGTTCTTGTCAAATATTGATCTGTCCCTCGTTGTTTACCAAGATTCTGCCTCCTTTTTTGACCCTCCAACCACCCAAATGAGTTTCAATGAGATTTGTAACAAATTATACAGTGCACTTGGTAAAATGCTTGTGCAGTATGATTTTATGGCTGGCAGACTAGTGCCAAGTTTGGAAGAGACTCACAGATTTGAAATTGACTGCAATGGTGCTGGCATTGTGGTTGCAGCTGCAAGAACTGACAGAAAATTGAGTGATTTTGGTGTGATTTATGCACCTAATCCAGAGTTGAGGGAATTAGTTGTTTTTCTGCATGAAGGGTGTGACCAAGAAACTGATTTGAAAGAAAAACCCCTTGCATCCTTACAGCTGACTCAGTTTGGTTGTGGAAGTTTGGCACTTGCTTCTCACTACAATCACTGCACTTTGGACGGTTTTGCAATAAGAGATTTTGAGGTAAACTTAGGGGCATTAACACGTGGTGAGGATCTCATCACAGTACCTAATGCTGATAGAACACTGCTGAGAGCAAGAAATCCTCCAATTGTAAGCCATCCACATTTTGAGTACTCAAAATCTACTGTGACACACAACTTGTTTACTCTCCGAGGAAAAAGTGTTACCAATGTCATGCAATCCCTGCCAGAAAACCAGATTCGTGTGCTTCATTTGTCGCCACAAAGCATTGCTATCTTCAAAAAGAAAGCCCTGGAGGAGGACAAAACCTTAAAGAACACAACCACTTTTCAGGTTGTTGCTGCCAAAATATGGAAGGCAAGAAGCATTGCAACAAGGATGTCGGAGGAAAAAGTGTCCACAATGCTGTTTCCAGTGGATGTGAGGAAAAGGGTGGTTCCTGAACTCCCAGATGGGTTTGCAGGAAATGCATTGGTCCCTGGTTTTGCAAGAGCAACTGTTAGGGAGCTGAAGGAGCTAGAAGATGCATATCACATAAGGAAGGTGCAAGAAGGGCTTAAAAGGTTGAATAATGAGTACATTAAGTCAGGGATAGATTGGTTAGAAGTGAACAAAGGAGCACCTTGTATGGAAGATAGTTTCTCCTTGGTGGCATGGTGGAGATTGGGGTTAGAGGAACAGCTTTTTGCATGGGGTAGACTCAAGTGTGCTACTCCACTAGAAGTTAAGCCTGGTTTGGTCATGCTATTGCCAGGGCCACAAGATCAAGGAGGCATTAACTTATGCCTTGATTTACCTGAGGATCAAATGCAAGACTTTAGTAGGATAATGCTACAAATTTAG 1326 0.4238 MGKIELVEKIVVVPEHPTPHKRMFLSNIDLSLVVYQDSASFFDPPTTQMSFNEICNKLYSALGKMLVQYDFMAGRLVPSLEETHRFEIDCNGAGIVVAAARTDRKLSDFGVIYAPNPELRELVVFLHEGCDQETDLKEKPLASLQLTQFGCGSLALASHYNHCTLDGFAIRDFEVNLGALTRGEDLITVPNADRTLLRARNPPIVSHPHFEYSKSTVTHNLFTLRGKSVTNVMQSLPENQIRVLHLSPQSIAIFKKKALEEDKTLKNTTTFQVVAAKIWKARSIATRMSEEKVSTMLFPVDVRKRVVPELPDGFAGNALVPGFARATVRELKELEDAYHIRKVQEGLKRLNNEYIKSGIDWLEVNKGAPCMEDSFSLVAWWRLGLEEQLFAWGRLKCATPLEVKPGLVMLLPGPQDQGGINLCLDLPEDQMQDFSRIMLQI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04036 441 Gene3D - 226 441 IPR023213 -
Vimu6g04036 441 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 434 - -
Vimu6g04036 441 Pfam Transferase family 3 435 - -
Vimu6g04036 441 Gene3D - 2 214 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04036 Vimu-Chr6 40393779 40395884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04036 3 441 Monolignol Biosynthesis Gene Families AT5G48930 28.508 1.38e-55 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04036 K15400 - gmx:100801822 774.237