Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04019 TTGTCTTCTCCAAATCTTAAGTCCTTCACATTCAATGAGCTGAAGAATGCCACCATAAATTTTTGGCATGATAATCTTCTCGATAAAGGGGGATTTGGATGCGTCTACAAAGGATGGATTGACAAACACACGTTTATAGCTTCAAAGCATGGATCAGGAATGGTCGTTGTTGTAAAGAAGCTCAAACCTGAAGGTTTTCAAGATCAACTGCGAGTTTTTCGTTTTTCTTTGTGTAAACTGTTTGTTTATACTTATCATGCAAAGGGATTGCAGGAGTTCAATGCTAAACTCTCTGATTTTGGTTTAGCCAAGGCGGGTCCTACTGGTGATAGAACTCACGTCTTTACTCAAGTCATGGGCACTCCAGGATATGCAGCACCTGAATATGTTGCAATTGGTAGGTTGACGGCGAAAAGCGATGTGTACAGCTTTGGAGTTGTGTTGCTTGAACTTCTATCTGGAAGAAGAGCTGTTGATAAAAAAACAGCTGAGTCTCCCCACCTGGGCGATTTAGCTTGGGGGAGCGAGGGGTGGAGGTCGACCAATTGTTATGTTTACTTCCTCTTCCTTGCCTCCTTCTCCTAA 585 0.4274 MSSPNLKSFTFNELKNATINFWHDNLLDKGGFGCVYKGWIDKHTFIASKHGSGMVVVVKKLKPEGFQDQLRVFRFSLCKLFVYTYHAKGLQEFNAKLSDFGLAKAGPTGDRTHVFTQVMGTPGYAAPEYVAIGRLTAKSDVYSFGVVLLELLSGRRAVDKKTAESPHLGDLAWGSEGWRSTNCYVYFLFLASFS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04019 194 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Vimu6g04019 194 SMART serkin_6 21 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04019 194 PANTHER OS01G0588500 PROTEIN-RELATED 3 69 - -
Vimu6g04019 194 Pfam Protein kinase domain 94 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04019 194 Gene3D Transferase(Phosphotransferase) domain 1 81 183 - -
Vimu6g04019 194 ProSiteProfiles Protein kinase domain profile. 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04019 194 SUPERFAMILY Protein kinase-like (PK-like) 4 163 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04019 Vimu-Chr6 40152210 40153532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04019 7 89 Glycoside Hydrolase AT3G07070 33.654 4.92e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu6g04019 Pkinase 3.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04019 - - lsv:111889332 163.31