Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04002 ATGGCGTACGCGATGAAGCCCACCAAACCAGGCTTTGAGGAATCCCAGGAACAGATCCACAAGATAAGGATCACCCTTTCCTCCAAGCATGTCAAAAATCTCGAGAAGGTTTGTGGGGACCTTGTTCGCGGTGCAAAGGACAAACGCCTCAGGGTTAAGGGACCTGTTAGGATGCCCACTAAGGTTCTTCACATAACTACCAGGAAATCCCCTTGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTGCACAAGAGAGTCATTGACCTCTACAGTTCCCCAGATGTAGTTAAGCAAATTACCTCTATCACGATTGAACCTGGTGTGGAGGTTGAGGTGACCATTGCAGATGCTTGA 366 0.4836 MAYAMKPTKPGFEESQEQIHKIRITLSSKHVKNLEKVCGDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04002 121 PRINTS Ribosomal protein S10 family signature 56 71 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu6g04002 121 PRINTS Ribosomal protein S10 family signature 21 34 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu6g04002 121 PRINTS Ribosomal protein S10 family signature 78 92 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu6g04002 121 Pfam Ribosomal protein S10p/S20e 23 117 IPR027486 -
Vimu6g04002 121 SUPERFAMILY Ribosomal protein S10 21 118 IPR036838 -
Vimu6g04002 121 Hamap 30S ribosomal protein S10 [rpsJ]. 19 118 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu6g04002 121 Gene3D Ribosomal protein S10 domain 5 120 IPR036838 -
Vimu6g04002 121 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 14 120 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu6g04002 121 FunFam 40S ribosomal protein S20 6 120 - -
Vimu6g04002 121 SMART Ribosomal_S10_2 23 117 IPR027486 -
Vimu6g04002 121 NCBIfam 30S ribosomal protein S10 20 118 IPR005729 GO:0003735|GO:0006412|GO:0015935
Vimu6g04002 121 ProSitePatterns Ribosomal protein S10 signature. 45 60 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04002 Vimu-Chr6 39885503 39886654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04002 1 121 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 89.344 1.55e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04002 K02969 - twl:120006120 235.343