Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03993 ATGTCCGATCGTGTTGAAGCATCGGAGGAAAGATTGTTGGCGTTGGAAGTGTCAGTCCGAGAGACGTTGGGGAAATTTCGCAGATTAATGTTGGAAGAGTTTACTAAGTTGCGGAGTTCAAGTCCTCAAAAGTCCAACTCGACGACACCACAAAGCAGCGTTTCCGGTGATCGTTCTTCGGCTGTCGATCGGAATCGCGGCACGAAACATTTGCCTTACTCTGAATTGATGAATAGGAAGGCTCAAGGGCTTTGTTTTAGATGTGGTGAAAAATACCACCCCTTGCATAGATGCACGGAGCGGCAAATGCGAATGGTGGTGTTAGCGGACGACGAAACAGTAAATGAAGCAGGGGAGGTTGTCGCGAGTGAGATGCGAGAAGGGGAAGATGATCGTACCTTGGAGTGTGGTTCTATGGAGCTGTTCGCAGAGGTTGAAGCGTCGTGGGATGGATATTGGCACCGGGTCTCTACTGCAGGAAAATGTGAGAAGTTGGACGTTCAACTAGGAGAATTCTCTACTACGGTGGAGCCATATGTCTTGGAGTTGGAAGACATAGACATGATTTTAGGAGTTTCTTGGTTGCGAAGATTTGGGAAGAATCTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTCTAAGACAAAAAGTCACCTGCACATAGTTCTTGAGTATGTGGAAAATGGATCGCTTGCAAATATTATCAAGCCCAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCGGTATATATAGCCCAGGTGTTGGAAGGTTTGGTTTATCTTCATGAACAAGGAGTTATTCATCGGGATATTAAGGGTGCAAACATACTGACAACTAAGGAGGCAAGCTTTCTAATTTTATGTTCTTGTTATACAATAGGGCTTTGTGTTTTGGCAATTATTCTGGCTGGTCTTGTGAAACTAGCTGATTTTGGTGTTGCTACAAAGCTAACAGAGGCAGATGTTAACACTCATTCAGTTGTTGGAACACCCTACTGGATGGCCCCTGAGGTTATAGAAATGGCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACAGTTATTGAACTTCTCACATGTGTTCCTCCTTATTATGATTTGCAGCCTATGCCAGCTCTTTTCCGTATTGTCCAGGATGAGCACCCGCCAATTCCCGATAGCCTTTCACCTGATATTACTGATTTTCTGCTTCAATGCTTTAAGAAGGATTCTAGACAAAGGCCTGATGCTAAAACTCTGCTGTCTCACCCCTGGATTCAAAATTGTAGACGTGTTCTGCAGTCTTCTCTTCGTCATAGTGCAACACTAAGAAATATAGAGGAAGATGACTCTGCAGATGCAGAAGATTCTGGTGGTTATCATAAGAGTGCTTATGAAGGCTCTTCTGTGGAGAAAGAGGATTCTGGAAAAGAGCTTTCATCTGTGGCTGCTCAGGGCAGAAAATCTCATGAAGACAATGCTTCAGTTCCTAATTTTTCCGATGAAAGAACACAAAAAGATCATGTTCCATCAGATCAGGTTCTTACCTTAGCCATTCGTGAGAAGTCACTTCTACAAACTGGATCTAGCAATCTCTCTCCAAATAGAGAAGTTGGTAATTTCGAGCCTGCTGGCAATCACGAAATTTCAAATGAAGGACTTCATGAAGTTATGATGAATGGAGAGGTTGGATCACCACAATCGAGAGGAATGGCTAGTAAGGTTGGAGGAAAAGACAGCTCTGTAAACAATGGTGACAAATCATTTGCTTTTGGGCCAAGAGGTCAAGATAATGGTTCCCTCAAGCCAAGCATGGTCATGTTAACTGAGTTGTTTAATTGCCGTATGAAGGCAATGAAGATGCCAACCACTGTGGAAGGAAATGAGCTGAGTAGATTTAGTGACCCACCAGGAGATGCCTACTTAGATGATTTATTCCACCCATTAGATAAACAACCTGGCGATGTTGCAGCAGAGGCATCCACATCTACATCCACATCTCATATGGTTAAAGGTAACACATCTACAACTGATGGTGGGAAAAATGACCTGGCTAAAGAGTTGAGGGCCACAATTGCTCGAAAGCAATGGGAGAAGGAAAGTGAAATTGGACAGGCAAACAGTGGTGGAAATCTTTTGCATCGAGTAATGATAGGTGTTCTAAAAGATGATGTGATTGATATAGATGGTTTGGTCTTTGATGAAAAGCTTCCTGGAGAGAACCTTTTTCCTTTGCAGGCTGTTGAGTTCAGCAAACTAGTTGGTTCATTAAAACCAGAGGAATCAGAAGATGTGATTGTGTCTGCATGTCAGAAACTTATTGGTATATTTAACCAACGCCCAGAGCAGAAGATTGTTTTTGTTACCCAGCATGGTTTACTTCCTCTAATAGATTTGCTAGAAGTTCCTAAAACACGTGTTATATGTTCTGTGCTTCAGCTTATAAATCAAATAGTTAAAGACAACACTGATTTCCTAGAAAATGCATGTCTTGTTGGATTGATTCCTGCAGTCACAAGCTTTGCAGTACCTGATCGTCCCCGAGAGATTCGAATGGAAGCAGCTTATTTTTTACAGCAGCTTTGTCAGTCGAGTTCTTTGACATTACAAATGTTTATAGCTTGCCGTGGAATACCAGTTTTAGTGGGATTTCTTGAGGCCGATTATGCCAAGTACAGGGAGATGGTTCATCTGGCTATTGATGGCATATGGCAGGTATTTAAGCTTCAGCAGTCAACTCCTAGAAATGATTTTTGCCGGATAGCTGCTAAGAATGGAATACTTCTCAGGCTTATAAATACTCTTTATAGCTTAAATGAGTCAACTCGACTAGCTTCTAGCTCTGCTGGGGGTGGATTTTCAGTTGATGGTTCGGCACAACGCCCACGATCTGGTATCTTGGATCCTACACACCCTTATATTAATCAGAAAGAGGCATTGCTATCTTCAGTAGACCAGCAAGATTCCTCTAAAGTGAGACGTGGAGTCCTTGATCATCACTTAGAACAGTCACATCCTTCATCCTCCAATCCTCGAAGATCAGATGCTAACTACTCCATAGATGATGCCATGTCATTGGAGAAGAATTCAACTCAAACACCCAGAGAATCTTCCGCGGGTGCATTGAAAGAGCGAGAGAATATGGATCGTTGGAAAACTGATCCTTATCGAGCGGATGTTGAATCCAGACAACGTAGCTCCACTAACAGGGCATCAACTGATAGGCCACCAAAATCAACAGAGCCATCATCAAATGGGTTATCACTGACAGGAGCTACACACCAGGAACAAGTTAGGCCTCTTCTTAGCTTGTTGGACAAAGAGCCACCATCTGGGCGCTTTTCTGGACAGCTCGAGTATGTACATCAGATGTCAGGATTGGAAAGACATGAAAGTGTACTCCCTTTGTTACATGCATCCGAAAAGAAAACGAATGGTGAACTAGACTTTTTGATGGCAGAATTTGCAGATGTTTCTCAACGTGGAAAGGAAAACGGAAGTCTTGACTCCAGTTCTAGAGTTTCTCATAAAGTCACTCCAAAGAAATTGGGGACTTTCAATTCCAGTGAAGGAGCTGCTTCCACATCTGGGATCGCATCACAGACAGCATCAGGTGTCCTGTCTGGTTCAGGTGTTCTAAATGCTAGACCAGGTAGTGCTACTTCGTCTGGGCTACTTTCCCACATGGTTTCATCACTGAATGCAGAAGTTGCCAGAGAATATCTGGAGAAAGTGGCAGATCTTCTGCTTGAGTTTGCACAAGCTGACACAACAGTGAAATCTTATATGTGTAGCCAAAGCTTGCTCAGTCGTCTTTTTCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATCATCTGTCAACTGATCCACATTGCTTAGAAAATCTTCAGCGCGCTGAAGCAATAAAATACTTGATACCAAATCTTGAACTCAAAGAAGGGTCTCTTGTATCAGAGATACATCACGAGGTCTTGAATGCCCTATTCAATTTATGCAAGATAAATAAGCGAAGACAAGAACAAGCAGCTGAAAATGGAATCATTCCCCATTTAATGCAATTCATTACATCCAATTCTCCCTTGAAACAGTATGCTTTGCCTCTTCTATGTGACATGGCTCATGCATCTCGCAATTCAAGGGAGCAGTTAAGGGCTCATGGTGGTTTGGATGTCTATTTGAACCTTCTTGAGGATGAGCTTTGGTCTGTGACAGCACTAGACTCTATTGCAGTTTGTTTAGCCCATGACAACGATAATAGGAAGGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAGCTTGTGAAGTTCTTCCAGTCATGTCCAGAGCGGCATTTTGTGCACATATTGGAGCCATTCTTGAAAATAATCACAAAATCTTCGAGGATTAATACGACATTGGCTATTAATGGGTTAACGCCGTTGCTCATTGCAAGGCTTGATCATCAGGATGCTATAGCTCGTCTAAATTTACTCAGGCTAATAAAGGCCGTTTATGAGCATCACCCTCAGCCCAAGAAGTTGATTGTGGAAAATGATTTACCTGAAAAGCTTCAAAACTTAATAGGGGAACGGAGAGATGGACAAGTGTTGGTTAAACAGATGGCTACCTCATTACTTAAAGCCCTACACATAAACACCGTTTTGTAA 4671 0.4245 MSDRVEASEERLLALEVSVRETLGKFRRLMLEEFTKLRSSSPQKSNSTTPQSSVSGDRSSAVDRNRGTKHLPYSELMNRKAQGLCFRCGEKYHPLHRCTERQMRMVVLADDETVNEAGEVVASEMREGEDDRTLECGSMELFAEVEASWDGYWHRVSTAGKCEKLDVQLGEFSTTVEPYVLELEDIDMILGVSWLRRFGKNLNHKNIVKYLGSSKTKSHLHIVLEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEASFLILCSCYTIGLCVLAIILAGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMAGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLLQCFKKDSRQRPDAKTLLSHPWIQNCRRVLQSSLRHSATLRNIEEDDSADAEDSGGYHKSAYEGSSVEKEDSGKELSSVAAQGRKSHEDNASVPNFSDERTQKDHVPSDQVLTLAIREKSLLQTGSSNLSPNREVGNFEPAGNHEISNEGLHEVMMNGEVGSPQSRGMASKVGGKDSSVNNGDKSFAFGPRGQDNGSLKPSMVMLTELFNCRMKAMKMPTTVEGNELSRFSDPPGDAYLDDLFHPLDKQPGDVAAEASTSTSTSHMVKGNTSTTDGGKNDLAKELRATIARKQWEKESEIGQANSGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFPLQAVEFSKLVGSLKPEESEDVIVSACQKLIGIFNQRPEQKIVFVTQHGLLPLIDLLEVPKTRVICSVLQLINQIVKDNTDFLENACLVGLIPAVTSFAVPDRPREIRMEAAYFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGIWQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASSSAGGGFSVDGSAQRPRSGILDPTHPYINQKEALLSSVDQQDSSKVRRGVLDHHLEQSHPSSSNPRRSDANYSIDDAMSLEKNSTQTPRESSAGALKERENMDRWKTDPYRADVESRQRSSTNRASTDRPPKSTEPSSNGLSLTGATHQEQVRPLLSLLDKEPPSGRFSGQLEYVHQMSGLERHESVLPLLHASEKKTNGELDFLMAEFADVSQRGKENGSLDSSSRVSHKVTPKKLGTFNSSEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNAEVAREYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPHCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQSCPERHFVHILEPFLKIITKSSRINTTLAINGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 1556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 650 680 - -
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 559 600 - -
Vimu6g03993 1556 CDD STKc_Cdc7_like 200 424 - -
Vimu6g03993 1556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 37 61 - -
Vimu6g03993 1556 CDD retropepsin_like 154 196 - -
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 1037 1062 - -
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 1023 1089 - -
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 944 969 - -
Vimu6g03993 1556 SMART arm_5 778 818 IPR000225 GO:0005515
Vimu6g03993 1556 SMART arm_5 1341 1380 IPR000225 GO:0005515
Vimu6g03993 1556 SMART arm_5 1295 1339 IPR000225 GO:0005515
Vimu6g03993 1556 SMART arm_5 863 906 IPR000225 GO:0005515
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 655 679 - -
Vimu6g03993 1556 SMART serkin_6 128 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03993 1556 SUPERFAMILY ARM repeat 1222 1549 IPR016024 -
Vimu6g03993 1556 SUPERFAMILY ARM repeat 749 944 IPR016024 -
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 524 546 - -
Vimu6g03993 1556 SUPERFAMILY Protein kinase-like (PK-like) 200 440 IPR011009 -
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 442 508 - -
Vimu6g03993 1556 Gene3D - 1211 1553 IPR011989 -
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 37 72 - -
Vimu6g03993 1556 FunFam MAP3K epsilon protein kinase 1-like 1210 1551 - -
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 1063 1089 - -
Vimu6g03993 1556 FunFam MAP3K epsilon protein kinase 1 742 956 - -
Vimu6g03993 1556 Pfam Protein kinase domain 200 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03993 1556 ProSiteProfiles Protein kinase domain profile. 142 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03993 1556 Gene3D Transferase(Phosphotransferase) domain 1 192 460 - -
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 492 507 - -
Vimu6g03993 1556 MobiDBLite consensus disorder prediction 453 476 - -
Vimu6g03993 1556 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 199 892 - -
Vimu6g03993 1556 Gene3D - 740 947 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03993 Vimu-Chr6 39692840 39713382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03993 165 1556 MAP Kinase Kinase Kinase AT3G13530 67.746 0.0 1830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Vimu6g03993 Pkinase 2.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03993 - - gmx:100813256 2348.55