Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03992 ATGGTTGGGAATTCTTCTGCAGCTAGTAATTGTGGAAGAAAGTCAGTAATATCAATGTACTTGATGAGAATAGAATGCAGGAGAGATCGATTATGGGCTTTGGTGTTGCAGCCATCAAAATACTTCTTTAGGCCAAGATTCTCTGATCATCAATACTTTCAATCTTTGTCCCCAAAGTATGCTTCACATGGCAGGATCATCAGAGAACGTCTTTTAGGTTCATATTCATGTAAACATACTTCATCTACAATTACTTTTGCTGCTCGGGACAAAAGGCCTAGTTTATGTCATAACAGTAGTCAGTTACGTGCCTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACAAGTACATGTTAATTCACATGCACGACTTGGAGAACAGGAAAAAGAGGAATGGCTTAATAATGAGATGCTAACTATACAAAATAAAAGGAGAGAATCACCATTTTTGACAAGGAAGGATAAGTTTAAAAATGAGTTCACAAGAAGAATTATTCCTTGGGAAAAAATAAATATTTCCTGGGACACATTTCCTTATCATATTCATGAAAATAGAAAAAATCTTCTTGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTTGCTTCAACTTATGGTACTCGGCTCTCATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTGTATCGTGAGAGATTGGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTCTTTTAGTGCTCGATAATAGCATCCTTGCTCCTTATGACATTGATGATGATTTATCATCTGATGATGATAATGCAGAGTCTGGGAAGGAGGGTTCTCCCGAATCAGAGAATGATGATGATAATGAAGTCAGCAATGAAGAAGAGTGGGTTAGCAGTACAGAGGAAAAGTCAGATGCAAGTGACAATGAAGATGCAGAAGCAGCAGCTGAAGCACACCTTAAGAAGGTTAAAGCAGCTGTTCTTCGGAAACTTGTCCCTTACACTGTAGAGGAATCTGAGAAGATTGTGGCTGGAGAATCTGAGAGTTCCGAATCCTCCAAGTCTAATTCTAATGATACCAAATCTTCTGATAAGTCTGGATGCCACCTAAAGAAAGGTGACCGTGTGAAGTACACTGGGCCATCTGTTCAAGTTACAGACAAGGATAGACCTTTAACTAATGGTCATAGAGGAGAGGTATATGAGGTCAATGGCGATCAAGTTGCAGTCATCTTGGATATTAATGAAGACAAGGTCAACGAGGGTGAGGTGGAGAACCCCAGTGATGATCATACCAAACCCCCGATTTATTGGATTCATGTTAAGGACATTGTGAATGATCTTGATGCTCAATCAAAGGATTGCTACATTGCTGTGGAGGCTTTATGTGAGGTTTTGCGTAGAAAACAGCCTCTTATTGTCTATTTTCCTCACATTTCACATTGGTTTCATAAATCAGTTCCTAAGTCAAACCGAAATGAGTTTTTTCATAAGGTTGAGGAGATGTTTGACCAGTTGTCTGGTCCTATAATATTGATTTGTGGGCAAAATAAAGTTGAATCAAAGGAGAACGAACTATTTACAATGGTACTACGATACCTTGGACGTATAGCTAAGTTGCCTCTTTCTCTGAAGCGTTGGACTGAGGAAATTAAAGGGGACAAGAAATCAGAAGATGACGAAATTAGCAAGCTCTTTTCTAATGTTCTGAGTATGCATCCACCCAAGGATGAGAATCAGCTGGCAACATTCAAGAAACAACTTGAAGAAGATAAAAAAATCGTCATTTCACGTAGTAATTTGAGTATACTACGGAAGGTTCTCGAAGAACATCAGCTATCATGCATTGACCTTTTACATTTAAATACTGAAGGCATCGTTTTGACAAAGCTCGTCTCAAGATTGAGAAGCAAGGAAACAATGTCAGGGAAGTCTTCTCAGAGACTCAAGGCCCTTGCAAAGGATGAGTTTGAGAACAATTTCATTTCATCTGTAGTACCTCCTGGTGAAATAGGGGTGAAGTTTGATGACGTAGGTGCTCTTGAAGATGTGAAAAAGTCACTTCATGAACTCGTAATTCTTCCAATGAGAAGGCCAGAGCTTTTCTCTAGAGGAAATCTTTTACGGCCCTGTAAAGGAATATTACTTTTTGGTCCTCCTGGCACTGGTAAGACCCTTCTGGCCAAGGCACTTGCAACTGAAGCTGGTGCAAATTTTATTAACATAACTTGTTCGAACCTTACTTCAAAGTGGTTTGGAGAAGGTGAAAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAACTTACTCCTGTCATTATATTTATTGATGAATTTGCTTCTGAGCATGAGGCCACTAGAAGAATGAGGAATGAATTCATGGCAGCCTGGGATGGATTGAGGTCAAAAGAACACCAACGAATCCTTATTCTTGGTGCAACAAACCGGCCATTTGATCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCCGATGCTGAAAATCGGTTGAAGATTTTAAGCATCTTTCTAACACAAGAAAATTTGGATTCTGAATTTCAGTTAGACAAACTTGCTAACTTGACTGATGGATACTCGGGAAGCGATTTGAAGAACCTCTGCATTGCTGCAGCGTATAGACCTGTTCAAGAGCTCTTAGAGAATGAAAAGAAGGTGGGTCCATCAGTTGCGCATGATGCAACAAGCATGACTGAGTTGAGGAAGTGGAATGAAATGCATGGAGAAGGTGGTAACAGGACAAAACCACCATTTGGATTTGGGAGCTGA 2805 0.3968 MVGNSSAASNCGRKSVISMYLMRIECRRDRLWALVLQPSKYFFRPRFSDHQYFQSLSPKYASHGRIIRERLLGSYSCKHTSSTITFAARDKRPSLCHNSSQLRAYSSESDGRNASEDKQVHVNSHARLGEQEKEEWLNNEMLTIQNKRRESPFLTRKDKFKNEFTRRIIPWEKINISWDTFPYHIHENRKNLLVECAASHLRHNKFASTYGTRLSSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDNSILAPYDIDDDLSSDDDNAESGKEGSPESENDDDNEVSNEEEWVSSTEEKSDASDNEDAEAAAEAHLKKVKAAVLRKLVPYTVEESEKIVAGESESSESSKSNSNDTKSSDKSGCHLKKGDRVKYTGPSVQVTDKDRPLTNGHRGEVYEVNGDQVAVILDINEDKVNEGEVENPSDDHTKPPIYWIHVKDIVNDLDAQSKDCYIAVEALCEVLRRKQPLIVYFPHISHWFHKSVPKSNRNEFFHKVEEMFDQLSGPIILICGQNKVESKENELFTMVLRYLGRIAKLPLSLKRWTEEIKGDKKSEDDEISKLFSNVLSMHPPKDENQLATFKKQLEEDKKIVISRSNLSILRKVLEEHQLSCIDLLHLNTEGIVLTKLVSRLRSKETMSGKSSQRLKALAKDEFENNFISSVVPPGEIGVKFDDVGALEDVKKSLHELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFINITCSNLTSKWFGEGEKLTKALFSFASKLTPVIIFIDEFASEHEATRRMRNEFMAAWDGLRSKEHQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRLKILSIFLTQENLDSEFQLDKLANLTDGYSGSDLKNLCIAAAYRPVQELLENEKKVGPSVAHDATSMTELRKWNEMHGEGGNRTKPPFGFGS 934
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03992 934 MobiDBLite consensus disorder prediction 262 315 - -
Vimu6g03992 934 SMART AAA_5 710 838 IPR003593 GO:0016887
Vimu6g03992 934 MobiDBLite consensus disorder prediction 341 398 - -
Vimu6g03992 934 Pfam AAA+ lid domain 860 893 IPR041569 -
Vimu6g03992 934 Gene3D - 837 900 - -
Vimu6g03992 934 Pfam ATPase family associated with various cellular activities (AAA) 714 835 IPR003959 GO:0005524|GO:0016887
Vimu6g03992 934 Gene3D - 673 836 IPR027417 -
Vimu6g03992 934 ProSitePatterns AAA-protein family signature. 808 827 IPR003960 GO:0005524|GO:0016887
Vimu6g03992 934 MobiDBLite consensus disorder prediction 296 315 - -
Vimu6g03992 934 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 159 927 - -
Vimu6g03992 934 MobiDBLite consensus disorder prediction 348 363 - -
Vimu6g03992 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 673 892 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu6g03992 Vimu-Chr6 39679278 39691383 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03992 673 896 Calmodulin-binding Proteins AT3G56690 38.655 5.15e-37 149