Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03988 ATGGAAGAAGATTTCGACATTCCCGGCGGCGAGGAAATGGATCTCGGAGAAGACAAGGTCGGCGAGGAGAGGGAGATCGGCTCCAACGGCCTCAAGAAGAAGCTCCTTAAGGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTTAAAGTTCATTACACGGGGACGTTGCTCGACGGAACGGAGTTCGATTCGAGCCGCGGCAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGGCAGGTAATTAAAGGATGGGATGAAGGTATTAAAACAATGAAGAAAGGTGAAAATGCTATTTTTACCATCCCTCCTGAGCTAGCATATGGTGAATCTGGTTCCCCTCCAACAATACCTCCTAATGCTACACTCCAATTTGATGTTGAGCTACTTTCATGGACTAGTGTAAAGGACATATGCAAGGATGGTGGTATATTTAAAAAGATACTTACTGAGGGAGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGTTAAGTATGAAGCTCGTCTGGAAGATGGAAAACTGGTAGGAAAATCTGATGGAGTGGAGTTCACAGTCAGAGAAGGTCATTATTGTCCTGCACTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGGTTTTGACAGTAAAGCCACAATATGGATTTGGTGAGAAGGGGAAGCCAGCACAAGGTGAAGAAGGTGCTGTTCCACCAAATGCATCATTAGAGATTACTCTTGAATTAGTTTCATGGAAAACTGTTTCTGAAGTAACTGATGACAAGAAGGTCATAAAGAAGATTCTCAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCAGTGTGAAAGTGAAACTAACTGGTAAGCTTCAAGATGGTACTACCTTTTTGAGTAAGGGCCATGATGAAGAAGAGAAGCTGTTTGAATTCAAAACAGACGAGGAACAAGTTGTTGATGGACTTGATAGAGCTGTATTGACTATGAAGAAGGGTGAGGTTGCATTGTTGACCATTGCACCTGAGTATGCCTTTGGTTCATCAGAGTCTCAGCAGGAGTTGGCAGTGGTTCCTCCTAACTCAACTGTATTTTTTGAAGTCGAGCTAGTTTCATTTGAGAAAGAGAAAGAGTCCTGGGATCTGAATACTGAAGAGAAACTTGAAGCTACCAGTAAGAAGAAAGAAGAAGGAAATGTGTTGTTTAAAGCTGGTAAATACGCAAGAGCATCCAAAAGATATGAAAAGGCTGTGAAGTACATAGAATATGATTCCTCATTTGGTGAGGAGGAGAAAAAGCTAGCGAAGACCTTGAAGGTTGCCTGCAATCTGAACAATGCTGCCTGCAAGTTGAAATTAAAAGACTATAAAGAAGCAGAAAAATTGTCTACCAAGGTGTTAGACCTTGAGAGTACAAACGTGAAAGCCCTCTATAGAAGGGCCCAAGCATATATGCAGCTAAGTGACTTGGATTTGGCTGAACTTGACATTAAGAAAGCTCTTGAGATTGACCCTAACAACAGGGATGTCAAATTGGAGTACAGGACTCTGAGGGAAAAGGTGAAAGAGAATAATCGAAAGGAGGCAAAATTTTATGGAAATATGATCAACAAGTTGACAAAGATTGGTTCCTGA 1635 0.43 MEEDFDIPGGEEMDLGEDKVGEEREIGSNGLKKKLLKEGQGWETPEVGDEVKVHYTGTLLDGTEFDSSRGRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILTEGEKWENPKDPDEVLVKYEARLEDGKLVGKSDGVEFTVREGHYCPALSKAVKTMKKGEKVVLTVKPQYGFGEKGKPAQGEEGAVPPNASLEITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGASVKVKLTGKLQDGTTFLSKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPEYAFGSSESQQELAVVPPNSTVFFEVELVSFEKEKESWDLNTEEKLEATSKKKEEGNVLFKAGKYARASKRYEKAVKYIEYDSSFGEEEKKLAKTLKVACNLNNAACKLKLKDYKEAEKLSTKVLDLESTNVKALYRRAQAYMQLSDLDLAELDIKKALEIDPNNRDVKLEYRTLREKVKENNRKEAKFYGNMINKLTKIGS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03988 544 Gene3D - 9 137 IPR046357 GO:0003755
Vimu6g03988 544 Coils Coil 507 527 - -
Vimu6g03988 544 FunFam Peptidylprolyl isomerase 379 534 - -
Vimu6g03988 544 Gene3D - 138 253 IPR046357 GO:0003755
Vimu6g03988 544 Pfam Tetratricopeptide repeat 474 507 IPR001440 GO:0005515
Vimu6g03988 544 SUPERFAMILY TPR-like 382 537 IPR011990 GO:0005515
Vimu6g03988 544 Gene3D - 254 375 IPR046357 GO:0003755
Vimu6g03988 544 FunFam Peptidylprolyl isomerase 254 376 - -
Vimu6g03988 544 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 48 136 IPR001179 GO:0003755
Vimu6g03988 544 SMART tpr_5 391 424 IPR019734 GO:0005515
Vimu6g03988 544 SMART tpr_5 440 473 IPR019734 GO:0005515
Vimu6g03988 544 SMART tpr_5 474 507 IPR019734 GO:0005515
Vimu6g03988 544 SUPERFAMILY FKBP-like 22 140 - -
Vimu6g03988 544 SUPERFAMILY FKBP-like 258 391 - -
Vimu6g03988 544 MobiDBLite consensus disorder prediction 1 33 - -
Vimu6g03988 544 FunFam Peptidylprolyl isomerase 21 139 - -
Vimu6g03988 544 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 159 250 IPR001179 GO:0003755
Vimu6g03988 544 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 43 133 IPR001179 GO:0003755
Vimu6g03988 544 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 275 371 IPR001179 GO:0003755
Vimu6g03988 544 SUPERFAMILY FKBP-like 139 255 - -
Vimu6g03988 544 Gene3D Tetratricopeptide repeat domain 377 534 IPR011990 GO:0005515
Vimu6g03988 544 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 281 374 IPR001179 GO:0003755
Vimu6g03988 544 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515
Vimu6g03988 544 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 145 256 - -
Vimu6g03988 544 FunFam Peptidylprolyl isomerase 140 253 - -
Vimu6g03988 544 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 164 253 IPR001179 GO:0003755
Vimu6g03988 544 MobiDBLite consensus disorder prediction 12 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03988 Vimu-Chr6 39610083 39614408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03988 19 542 Calmodulin-binding Proteins AT3G25230 82.252 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03988 K09571 - gmx:100812632 1023.85