Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03986 ATGGGTATGTATTTCCAGGGATTCCATGCACAAGAGGCGTGCAACTGGAGGCAAGAAGAAGGCGTGGAGAAAGAAGAGAAATTGTACACTATCCCAATTATTTGTATTTATGCAAATATATTTTTTTTATTGGATTCATGTAGGTATGAGCTTGGGCGCCAATCAGCAAACACCAAGTTGTCAAGCAACAAGACAATCCGGAGGATTCGCGTTAGAGGTGGTAATGTAAAATGGAGGGCACTGAGGTTGGATACTGGAAATTACTCATGGGGTAGTGAAGCAGTAACCCGAAAGACTCGTATTCTAGATGTTGTCTACAATGCCTCAAACAATGAGCTTGTGAGAACCCAGACATTGGTCAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAACACTATGGTGTTGACATTGGCCGAAAAAAGAAAGCAGCAACCAAGAAGGACTCTACCGAGGAGGGTGATGCTGCTGCTGAAGAAACAAAGAAAAGTAACCATGTGCAGAGAAAAATTGAGAAGCGCCAGAAAGATCGCAAACTTGATGCTCACATTGAAGAGCAATTTGGTGGTGGCAGATTGTTGGCATGTATTTCTTCTCGCCCTGGACAATGTGGCAGGGCCGACGGGTACATTCTGGAAGGTAAGGAGCTGGAGTTTTACATGAAGAAACTCCAGAAAAAGAAGGGAAAGGGTGCGGCTTAA 720 0.4431 MGMYFQGFHAQEACNWRQEEGVEKEEKLYTIPIICIYANIFFLLDSCRYELGRQSANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAATKKDSTEEGDAAAEETKKSNHVQRKIEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03986 239 Gene3D - 54 182 - -
Vimu6g03986 239 Gene3D - 183 234 - -
Vimu6g03986 239 MobiDBLite consensus disorder prediction 148 184 - -
Vimu6g03986 239 CDD Ribosomal_S8e_like 48 218 - -
Vimu6g03986 239 PANTHER 40S RIBOSOMAL PROTEIN S8 47 236 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vimu6g03986 239 NCBIfam ribosomal protein eS8 48 220 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vimu6g03986 239 FunFam 40S ribosomal protein S8 54 182 - -
Vimu6g03986 239 FunFam 40S ribosomal protein S8 183 236 - -
Vimu6g03986 239 Pfam Ribosomal protein S8e 48 218 IPR022309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03986 Vimu-Chr6 39553439 39555516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03986 48 227 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 82.222 5.85e-106 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03986 K02995 - gmx:100500112 350.903