Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03982 ATGGAAAACCAGTTCTTCCTCAATGCTCCTCAGCTCCATTTTGACCCTTCACCACCTCCTTGTCCACCTTCTTGGCACTCACTCTCTTCTCCCATGGATGTTCAAGTTTTGAATTGCTCAATTGAGAGGACACATGATTGCTTTTACACACCGCCATGGGACAAGTCAACGGATCATGGTGTTCAGTTTGATTCTGCACTCAGTTCAATGGTGTCTTCTCCTGCAGCTTCCAATTCCAACATGTCAAGTGAGAATTTTGTCATCAGGGAGTTGATTGGCAAATTGGGAAACATTGGTGGTGGTGGCTCTGATGAGATCTCACCTCATTCTCATCCTTTGGTTCCTTCATCTTCCTACATCAATGGCAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCCAAGCTGAGCTTGAACAAGATCCCCACAATGATGAATCACTTGGTGAAAGAGGGCATGCCCCCCAGTTTGAATTCCAGTGTGGCAGAATTCTCAACTGATCCTGGTTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGGGCCCCAGCAATGCTGAGTTGACTCACAGATCTTCTCCATTGGTGGAAAATGGGAAGCTCCCCAGAGTCTCAAGTAGTCCATCTCTCAAAGTGCTTGGATCTCAAATGAGTGCCCAGGAGAACAAGAATTCTCCATTGCAAGACCAAATGGAAGTGGCCAATTCTCAAGAGGAATCAACAATCTCGGAACAAATTCCAAATGGGGACAATGGAGTGAAACCTTCCCCATATGCGAATTCTAGAAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAGGAAACTTCAACCCCCACCAACCCCCCTATGGCTGCTGAAGCCAGTGAAAATTCAAATGCAAAGCGCAGCAAGGCTAACGAAGGTGAGGGCAATGAAAATGGCCAAGTGAAGGCAGAGGAAGAGTCCAAAGGGGTAACTAGTAATACAAATGATGACAAACAGAACAAGACTAACTCAAAACCTCCAGAGCCTCCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGACAGTCACAGTCTTGCAGAAAGAGTCCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTGACAGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTCCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCCATGAAGTTGGCTTCTGTTAACACCAAGCTGGATTTTAGTATTGAGAGTCTAATCTCGAAAGATATATTTCAATCAAATAATTCTTTGGCACAGCCAATATTCCCACTAGATTCCTCAGCACCAGCCTTTTATGGGCAACACCCTCAACAAAACCCAGCAATCCACAGTAACATTCCTAATGGAACTGTGTCCCACACCTCAGTGGACCCATTGGATACTGGTTTGTGCCAAAACCTTGGCATGCAGTTATCTCACCTAAATGCCTTTAATGAAGGTGCCTCTCAGTATCCAATAGCATTCTCTGAAGGTGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCAAATAGGAAAACACCAGTACAATCTCAGAGTTTCAATGGCTCAAATCAAGTACCCCTATGA 1683 0.448 MENQFFLNAPQLHFDPSPPPCPPSWHSLSSPMDVQVLNCSIERTHDCFYTPPWDKSTDHGVQFDSALSSMVSSPAASNSNMSSENFVIRELIGKLGNIGGGGSDEISPHSHPLVPSSSYINGNNSTNTSCYSTPLSSPPKLSLNKIPTMMNHLVKEGMPPSLNSSVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQLGPSNAELTHRSSPLVENGKLPRVSSSPSLKVLGSQMSAQENKNSPLQDQMEVANSQEESTISEQIPNGDNGVKPSPYANSRKRKGPSKGKAKETSTPTNPPMAAEASENSNAKRSKANEGEGNENGQVKAEEESKGVTSNTNDDKQNKTNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTKLDFSIESLISKDIFQSNNSLAQPIFPLDSSAPAFYGQHPQQNPAIHSNIPNGTVSHTSVDPLDTGLCQNLGMQLSHLNAFNEGASQYPIAFSEGDLHTIVQMGFGQTANRKTPVQSQSFNGSNQVPL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03982 560 MobiDBLite consensus disorder prediction 188 208 - -
Vimu6g03982 560 MobiDBLite consensus disorder prediction 288 308 - -
Vimu6g03982 560 MobiDBLite consensus disorder prediction 309 336 - -
Vimu6g03982 560 SMART finulus 372 422 IPR011598 GO:0046983
Vimu6g03982 560 CDD bHLH_AtBPE_like 356 441 - -
Vimu6g03982 560 Gene3D - 363 438 IPR036638 GO:0046983
Vimu6g03982 560 MobiDBLite consensus disorder prediction 188 357 - -
Vimu6g03982 560 FunFam Basic helix-loop-helix transcription factor 363 435 - -
Vimu6g03982 560 Pfam Helix-loop-helix DNA-binding domain 370 417 IPR011598 GO:0046983
Vimu6g03982 560 Coils Coil 413 433 - -
Vimu6g03982 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 366 416 IPR011598 GO:0046983
Vimu6g03982 560 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 246 474 IPR024097 GO:0006355
Vimu6g03982 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 434 IPR036638 GO:0046983
Vimu6g03982 560 MobiDBLite consensus disorder prediction 215 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03982 Vimu-Chr6 39516186 39518554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03982 1 526 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.948 2.59e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g03982 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03982 - - gmx:100787699 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03982 6 39516186 39518554 Vimu9g01423 9 22801450 22804269 PCT