Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03970 ATGGCCAAGCCAGGGGTGGTTGAATCTGATCCAGGGGTGATGGTGAAGAAGGCCATAGAGTTGAAGAGGGAGCTTCAGAGGTTGGTGAAGTCCATTGTGGATGATGAGGATTGCAGCACTGAGACCATTGATCAGGCAAAAGAGACTCTTTGTGTTCTCAAGGAGTTGAAACTCAGAAGGAGGTCTTCACTGTCTTTGAAGCTGCACAACAGGAATGTGTCATCTTGCCCTGATGAATTCAAGTGTCCTCTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGCTAAGTGCTGGAAACAGGACTTGCCCTCGAACGCATCAAGTTATTTCACACACTGTTCTCACACCAAATCATCTAATAAGGGAAATGATAGAACAGTGGTCAAAAAACCAAGGTGTTGAATTGTCGAATACTGTTCAATACATCGATGAGGAAGGTTTAAACCAAGCAGACAGGGAGATTTTTCTCCGTTTGCTTAAGAAAATGTCATCAACACTTTCTGATCAGAAGACGGCTGCAAAAGAACTGCGCATGTTGACAAAGAAGCATCCTTGTTTCCGAGTACTTTTCTGCGATTCTGCAGATGCGATTCCCCAATTGCTGAAGCCAATTTGTGGGAGTGATTCTTTCAGCAGTGTTCAACCTGATCTCCAAGAAGACGTGATCACAACACTCCTCAATATCTCTATTCATGACAACAACAAAAAGCGAGTGGCTGAAACACCAATGGTGATTCCTCTCCTTATGAGAGCATTGAGAAGTGGAACAATTGAAACAAGAAGCAATGCTGCAGCTGCCCTATTCACCTTGTCAGCTCTTGACTCAAACAAGGAAATCATAGGGAAATCAGGAGCCTTAAAGCCATTGATCGATCTCTTAGAAGAAGGGCATCCCTTAGCAATGAAGGATGTTGCTTCAGCAATATTTAACATATGTGTGATGCATGAGAACAAGGCAAGAGCAGTGAAGGAGGGTGCAGTGAGAGTGATTTTGACAAAGATAAAGAATGAGGTTCATGTTGATGAATTACTAGCCATCCTTGCACTGCTTTCAAGTCATCAGAGGGCTGTTAATGAGATGGGAGATGTTGGAACAGTGGGTAGCTTGCTGAGAATTATCAGAGAGAGCTCATGTGAACGGAACAAAGAGAATTGTGTGGCAATTCTTCAAACAATTTGTTTGCATGACAGATCAAAGTTGAAGGAAATAAGAGAAGAAGAGAACAGTCACAAAACAATCTCTGAGTTAGCACAGAGTGGAACATCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTCGAGAGACTTAACAGGGTTGTTAATATCACACACACTGCATAA 1383 0.4252 MAKPGVVESDPGVMVKKAIELKRELQRLVKSIVDDEDCSTETIDQAKETLCVLKELKLRRRSSLSLKLHNRNVSSCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLSAGNRTCPRTHQVISHTVLTPNHLIREMIEQWSKNQGVELSNTVQYIDEEGLNQADREIFLRLLKKMSSTLSDQKTAAKELRMLTKKHPCFRVLFCDSADAIPQLLKPICGSDSFSSVQPDLQEDVITTLLNISIHDNNKKRVAETPMVIPLLMRALRSGTIETRSNAAAALFTLSALDSNKEIIGKSGALKPLIDLLEEGHPLAMKDVASAIFNICVMHENKARAVKEGAVRVILTKIKNEVHVDELLAILALLSSHQRAVNEMGDVGTVGSLLRIIRESSCERNKENCVAILQTICLHDRSKLKEIREEENSHKTISELAQSGTSRAKRKASGILERLNRVVNITHTA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03970 460 Gene3D - 294 455 IPR011989 -
Vimu6g03970 460 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Vimu6g03970 460 PANTHER U BOX DOMAIN-CONTAINING 16 450 - -
Vimu6g03970 460 FunFam RING-type E3 ubiquitin transferase 355 456 - -
Vimu6g03970 460 SUPERFAMILY ARM repeat 168 450 IPR016024 -
Vimu6g03970 460 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Vimu6g03970 460 FunFam RING-type E3 ubiquitin transferase 207 352 - -
Vimu6g03970 460 Gene3D - 165 293 IPR011989 -
Vimu6g03970 460 SMART arm_5 246 287 IPR000225 GO:0005515
Vimu6g03970 460 SMART arm_5 288 328 IPR000225 GO:0005515
Vimu6g03970 460 CDD RING-Ubox_PUB 77 129 IPR045210 -
Vimu6g03970 460 SUPERFAMILY RING/U-box 70 150 - -
Vimu6g03970 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 149 IPR013083 -
Vimu6g03970 460 Pfam U-box domain 77 145 IPR003613 GO:0004842|GO:0016567
Vimu6g03970 460 FunFam RING-type E3 ubiquitin transferase 75 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03970 Vimu-Chr6 39326324 39329043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03970 138 460 U-box Gene Family AT3G07360 59.940 2.29e-130 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03970 - - gmx:100809408 809.675