Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03969 GAGGGAAAAGGAACCAACAAACAAACAACAATGCCTCCAAAAGTCCACGATTTTTTGTCTGTGGCAAAACAAGCGGAGCAACTTCGAAAGGACGGCAACAATTACTTCAACAAACAGCGTTTTGGAGCTGCCATTGATGCTTATACTGAGGCGATTGCACTGTGCCCCGATGTTCCGGTGTATTGGACCAACCGTGCTCTCTGTCATCTCAAGCGCAGGATTTCCTTACATTCTTCTAAAATGGCATTAGTTGCACTAGAGGCCCACTATATGTTAGGTCTGGCATTGGTAGAGAGACAAGAGTTTGCTAAAGGAATCTTAGAATTGAAGAAGGCTTTGGATCTTGATAGAGGTTCCCATCCTAAGGGCCAAATGGTAGAGGAAATATGGCAAGAGCTTGCAAAAGCAAAATACCTAGAGTGGGAACATTCATATGTTAAGCGATCATGGGAACTACAGAGCTTGAAAGAAGCTTGTGAGGATGCTCTAAAGGAAAAACATTTTCTCGAAATCCCCCACACGGAAGGATCTGTAGAAGATGATACTACCCATTTAGAACAGTTAGAGGCTTTAGGAAGAGTGTTTGATAAAGTTGCAGAACAAGACATGCCTACTGAGGTACCAGATTATCTGTGCTGTAGAATCTCACTTGACATTTTCTGTGATCCTGTGATTACCCCAAGTGGACTTACATACGAGAAGACAGTGATTATTGACCATCTTGAGAAGGTGGGTAAGTTTGATCCAGTGACTCGAGAACCTCTTGATCCATCACAGCTAATACCAAACCTGGCAATAAAGCAAGCAGTTGAGGCATTCTTGGATAAACATGGGTGGGCATACAAAGATATATTAACAAAAAGCTTTTAA 870 0.423 EGKGTNKQTTMPPKVHDFLSVAKQAEQLRKDGNNYFNKQRFGAAIDAYTEAIALCPDVPVYWTNRALCHLKRRISLHSSKMALVALEAHYMLGLALVERQEFAKGILELKKALDLDRGSHPKGQMVEEIWQELAKAKYLEWEHSYVKRSWELQSLKEACEDALKEKHFLEIPHTEGSVEDDTTHLEQLEALGRVFDKVAEQDMPTEVPDYLCCRISLDIFCDPVITPSGLTYEKTVIIDHLEKVGKFDPVTREPLDPSQLIPNLAIKQAVEAFLDKHGWAYKDILTKSF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03969 289 SUPERFAMILY RING/U-box 201 283 - -
Vimu6g03969 289 SMART Ubox_2 210 273 IPR003613 GO:0004842|GO:0016567
Vimu6g03969 289 ProSiteProfiles TPR repeat profile. 25 58 IPR019734 GO:0005515
Vimu6g03969 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 13 282 IPR045200 GO:0000209|GO:0061630
Vimu6g03969 289 Pfam U-box domain 207 279 IPR003613 GO:0004842|GO:0016567
Vimu6g03969 289 SUPERFAMILY TPR-like 24 119 IPR011990 GO:0005515
Vimu6g03969 289 Gene3D Tetratricopeptide repeat domain 20 148 IPR011990 GO:0005515
Vimu6g03969 289 SMART tpr_5 25 58 IPR019734 GO:0005515
Vimu6g03969 289 SMART tpr_5 86 119 IPR019734 GO:0005515
Vimu6g03969 289 ProSiteProfiles U-box domain profile. 206 280 IPR003613 GO:0004842|GO:0016567
Vimu6g03969 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 283 IPR013083 -
Vimu6g03969 289 CDD RING-Ubox_CHIP 207 277 IPR045202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03969 Vimu-Chr6 39317232 39319950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03969 25 282 U-box Gene Family AT3G07370 60.526 9.44e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03969 K09561 - gmx:100796519 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03969 6 39317232 39319950 Vimu9g01456 9 23416431 23422658 PCT