Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03961 ATGAAATCACCATTTTGTTGCATCTTTTCCAGACTTCATGAAGATCTCATCAGGAGGAGGGCAAGAAATGGTACCAAGAACGAATTTGTATTTGTTCTTGGTTTCAAGAGCGACAAGCATGTCGTGCCTCCATTGTTGATAATTGGTGTCAGAGAGAGGCGAATTGACAAGAATGAGGGCTGGAACAAAGTAGAAGATGAAGAAAAGGGGCAAAGGAAGAACCCTAATTATTTTCTTTCTTCTGATACCATTCACCGTTTCGGGGCTTCTCTCGCGGTGCCCGGTAAACCATGTACGCCGGTGACAGCGACAGCAGCAGCAGCGATAGCGGAGAGCGGGTCCGGACTTCCAGAACCTGAATGTGGTATCGGCGGTGGGACGCGGCGCGAAGGGCGTGGTTTTCCTGGCGCGGGTGACGGAGAAGGGAAACGGAGACTGGTTGGCGCTGAAGGTGGTGTCGAAGGAGCTGCTGAGGAAGAAGAACAGGAACGAGGGAAGCTGCAAGAGGGTGTCGTTCGAGAGGCACATACTACGTCGTTTCGATCACCCGCTATTGCCCAGGTTCCGAGGCGCTCTCGACACCGACCAACTCACAGGTTTCGCAATCGATTATTGCCACGGCGGAAACCTCCATTTGCTTCGGAAGAAGCAACCGGAGAAGACCTTCTCCGAAGAAACCTAGAATTGGTTCTAGTGTTGGAGTATTTGCACAACTTTGGAATAGTTTATAGAGATTTAAAGCCAGAGAATATCATGATCCAAGAATCAGGTCACATAATGTTAGTGGATTTTGACCTTTCCAAGAAGTTATACCTTCGTTCAACTCCCTCGTCGAGTTGCAGCTCATCACCGGGTTCTGACTCGTCACCGGAGAAGGATCGGAGGAAGCGACGACTATCACGATTCAGCTGTTACTGCCATTCAGGGATATCCTTGTACGACTCAGATTTTCCGAATCAACTCAACGCCATCCCAACGAGTCGCAGCATGTCAGACTCAGTGGAAAAGTCGAACTCCTTTGTCGGAACGGAAGAGTACGTAGCACCGGAGGTCATCTCCGGAGAAGGACACGACTTCGCCGTTGATTGGTGGTCATTGGGCATTGTTCTGCACGAGTTGATCTACGGAACGACCCCGTTTAAGGGCGCGAACAGGAAAGAAACGTTTCATCGTATCATAACGAAGGAACCCGAATTATCAGGTGCAACAACGCCTTTGAGGGACTTGATTAAAAAGTTGCTTGAGAAGGATCCTGAACGTAGGATCCAGGTGAAAGATATCAAGAGCCACGATTTCTTCAAAGGCGTGAAGTGGGACACGATCTTGGAAATCTCACGGCCACCGTATATTCCTCAAAATGAGATAAAGGATTCAACAGGGTTTTCTCAGAAGGATGTTGAATCGTTTGTTCATAGAATATTTTTTCCCAAGAGTAATAAAGAGGAGGAAGATAAAACAAATAAAAGGGAGGCAAAAAAGAATGAAAAGGAAAATTATAAAAATGAGGAAAACGATAAAAAGGAGGAAAGTAATAAAAATGTGTGGGTTGACATGTTAAATCAAAATTCTGCTAAGGATGAAAATTTTTTAATTTTTTGA 1599 0.4615 MKSPFCCIFSRLHEDLIRRRARNGTKNEFVFVLGFKSDKHVVPPLLIIGVRERRIDKNEGWNKVEDEEKGQRKNPNYFLSSDTIHRFGASLAVPGKPCTPVTATAAAAIAESGSGLPEPECGIGGGTRREGRGFPGAGDGEGKRRLVGAEGGVEGAAEEEEQERGKLQEGVVREAHTTSFRSPAIAQVPRRSRHRPTHRFRNRLLPRRKPPFASEEATGEDLLRRNLELVLVLEYLHNFGIVYRDLKPENIMIQESGHIMLVDFDLSKKLYLRSTPSSSCSSSPGSDSSPEKDRRKRRLSRFSCYCHSGISLYDSDFPNQLNAIPTSRSMSDSVEKSNSFVGTEEYVAPEVISGEGHDFAVDWWSLGIVLHELIYGTTPFKGANRKETFHRIITKEPELSGATTPLRDLIKKLLEKDPERRIQVKDIKSHDFFKGVKWDTILEISRPPYIPQNEIKDSTGFSQKDVESFVHRIFFPKSNKEEEDKTNKREAKKNEKENYKNEENDKKEESNKNVWVDMLNQNSAKDENFLIF 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03961 532 MobiDBLite consensus disorder prediction 274 295 - -
Vimu6g03961 532 Gene3D Transferase(Phosphotransferase) domain 1 228 280 - -
Vimu6g03961 532 MobiDBLite consensus disorder prediction 480 514 - -
Vimu6g03961 532 FunFam Serine/threonine-protein kinase OXI1 214 271 - -
Vimu6g03961 532 SUPERFAMILY Protein kinase-like (PK-like) 224 465 IPR011009 -
Vimu6g03961 532 MobiDBLite consensus disorder prediction 125 145 - -
Vimu6g03961 532 Pfam Protein kinase domain 332 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03961 532 Pfam Protein kinase domain 228 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03961 532 Gene3D Transferase(Phosphotransferase) domain 1 334 452 - -
Vimu6g03961 532 ProSiteProfiles AGC-kinase C-terminal domain profile. 434 532 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu6g03961 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Vimu6g03961 532 ProSiteProfiles Protein kinase domain profile. 1 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03961 532 Coils Coil 478 513 - -
Vimu6g03961 532 PANTHER FLIPPASE KINASE 1-RELATED 228 458 - -
Vimu6g03961 532 SMART serkin_6 158 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03961 532 Gene3D Phosphorylase Kinase; domain 1 453 462 - -
Vimu6g03961 532 MobiDBLite consensus disorder prediction 480 513 - -
Vimu6g03961 532 FunFam Serine/threonine-protein kinase OXI1 335 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03961 Vimu-Chr6 39221828 39224828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03961 228 532 AGC Kinase Gene Family AT3G25250 51.935 1.08e-98 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu6g03961 Pkinase 4.3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03961 K20714 - gmx:100813693 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03961 6 39221828 39224828 Vimu6g03961 6 39221828 39224828 ECH
Vimu6g03961 6 39221828 39224828 Vimu9g01457 9 23435142 23437518 PCT